Difference between revisions of "SJ08953"

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(Created page with "Category:gene == Gene SJ18318 == * transcription-direction: ** negative * right-end-position: ** 126351 * left-end-position: ** 102514 * centisome-position: ** 15.812643...")
(Created page with "Category:gene == Gene SJ08953 == * transcription-direction: ** negative * right-end-position: ** 119860 * left-end-position: ** 116617 * centisome-position: ** 27.213707...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18318 ==
+
== Gene SJ08953 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 126351
+
** 119860
 
* left-end-position:
 
* left-end-position:
−
** 102514
+
** 116617
 
* centisome-position:
 
* centisome-position:
−
** 15.812643    
+
** 27.213707    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
−
* [[3.2.1.21-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[3.2.1.58-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10769]]
+
* [[GLYOXIII-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10773]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13602]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13603]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14179]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-2043]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-5341]]
+
* [[HPPD]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-8036]]
+
* [[RXN-10815]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9674]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-5395]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6788]]
+
* [[PWY-7432]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-1581]]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7091]]
+
* [[PWY-1422]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7092]]
+
* [[PWY-6318]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-3121]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5176]]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6002]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=126351}}
+
{{#set: right-end-position=119860}}
−
{{#set: left-end-position=102514}}
+
{{#set: left-end-position=116617}}
−
{{#set: centisome-position=15.812643   }}
+
{{#set: centisome-position=27.213707   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=12}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=5}}

Latest revision as of 11:07, 18 March 2021

Gene SJ08953

  • transcription-direction:
    • negative
  • right-end-position:
    • 119860
  • left-end-position:
    • 116617
  • centisome-position:
    • 27.213707

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-1581
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-1422
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ08953&oldid=135026"