Difference between revisions of "SJ09285"

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(Created page with "Category:gene == Gene SJ12510 == * transcription-direction: ** negative * right-end-position: ** 164288 * left-end-position: ** 135322 * centisome-position: ** 37.82702...")
 
(Created page with "Category:gene == Gene SJ14768 == * transcription-direction: ** negative * right-end-position: ** 527286 * left-end-position: ** 518695 * centisome-position: ** 72.83978...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12510 ==
+
== Gene SJ14768 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 164288
+
** 527286
 
* left-end-position:
 
* left-end-position:
−
** 135322
+
** 518695
 
* centisome-position:
 
* centisome-position:
−
** 37.82702    
+
** 72.83978    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ADENYL-KIN-RXN]]
+
* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ALCOHOL-DEHYDROG-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[PGCM]]
+
* [[RXN-10781]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PGMTh]]
+
* [[RXN-10911]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PHOSPHOGLUCMUT-RXN]]
+
* [[RXN-10915]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12448]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13198]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14148]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-5424]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7657]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7693]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7694]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7700]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7706]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14456]]
+
* [[RXN3O-4113]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16997]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16998]]
+
* [[RXN66-478]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 39: Line 70:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7219]]
+
* [[PWY-6587]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6737]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7238]]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLYCOGENSYNTH-PWY]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7900]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6731]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5941]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-622]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6317]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2723]]
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-3801]]
+
* [[PWY-5480]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7343]]
+
* [[P161-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6333]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5486]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY66-21]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ETOH-ACETYLCOA-ANA-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4LZ-257]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7118]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5940]]
 
* [[PWY-5940]]
 
** '''2''' reactions found over '''18''' reactions in the full pathway
 
** '''2''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-7902]]
+
* [[P562-PWY]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5384]]
+
* [[PWY-7241]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7237]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6313]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6342]]
 +
** '''8''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7013]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3162]]
 +
** '''2''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7396]]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5057]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7111]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5076]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6871]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5078]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5751]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5079]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5082]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6802]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5661]]
+
* [[PWY3O-4108]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-422]]
+
* [[PWY66-389]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
</div>
 
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=164288}}
+
{{#set: right-end-position=527286}}
−
{{#set: left-end-position=135322}}
+
{{#set: left-end-position=518695}}
−
{{#set: centisome-position=37.82702   }}
+
{{#set: centisome-position=72.83978   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=17}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=31}}

Revision as of 14:23, 26 August 2019

Gene SJ14768

  • transcription-direction:
    • negative
  • right-end-position:
    • 527286
  • left-end-position:
    • 518695
  • centisome-position:
    • 72.83978

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6587
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5480
    • 1 reactions found over 3 reactions in the full pathway
  • P161-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-6333
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5486
    • 1 reactions found over 2 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • ETOH-ACETYLCOA-ANA-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4LZ-257
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7118
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5940
    • 2 reactions found over 18 reactions in the full pathway
  • P562-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7241
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7237
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6313
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6342
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-7013
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-3162
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7396
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5057
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7111
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5076
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6871
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5078
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5751
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5082
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6802
    • 3 reactions found over 4 reactions in the full pathway
  • PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY66-389
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09285&oldid=19361"