Difference between revisions of "SJ09370"

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(Created page with "Category:gene == Gene SJ18961 == * transcription-direction: ** negative * right-end-position: ** 332287 * left-end-position: ** 320241 * centisome-position: ** 49.99914...")
(Created page with "Category:gene == Gene SJ09370 == * transcription-direction: ** negative * right-end-position: ** 487330 * left-end-position: ** 478266 * centisome-position: ** 58.27843...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18961 ==
+
== Gene SJ09370 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 332287
+
** 487330
 
* left-end-position:
 
* left-end-position:
−
** 320241
+
** 478266
 
* centisome-position:
 
* centisome-position:
−
** 49.99914    
+
** 58.27843    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[RXN-10642]]
−
* [[HISTALDEHYD-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[HISTOLDEHYD-RXN]]
+
* [[UROGENDECARBOX-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11727]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8001]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[HISTSYN-PWY]]
+
* [[HEMESYN2-PWY]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6634]]
+
* [[PWY0-1415]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7766]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5531]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=332287}}
+
{{#set: right-end-position=487330}}
−
{{#set: left-end-position=320241}}
+
{{#set: left-end-position=478266}}
−
{{#set: centisome-position=49.99914   }}
+
{{#set: centisome-position=58.27843   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=7}}

Latest revision as of 11:10, 18 March 2021

Gene SJ09370

  • transcription-direction:
    • negative
  • right-end-position:
    • 487330
  • left-end-position:
    • 478266
  • centisome-position:
    • 58.27843

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-7766
    • 3 reactions found over 5 reactions in the full pathway
  • CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7159
    • 5 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09370&oldid=136510"