Difference between revisions of "SJ09456"

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(Created page with "Category:gene == Gene SJ19607 == * transcription-direction: ** negative * right-end-position: ** 184873 * left-end-position: ** 179088 * centisome-position: ** 79.86835...")
(Created page with "Category:gene == Gene SJ02923 == * transcription-direction: ** positive * right-end-position: ** 510784 * left-end-position: ** 495267 * centisome-position: ** 93.25499...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ19607 ==
+
== Gene SJ02923 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 184873
+
** 510784
 
* left-end-position:
 
* left-end-position:
−
** 179088
+
** 495267
 
* centisome-position:
 
* centisome-position:
−
** 79.86835    
+
** 93.25499    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[G5DH]]
−
* [[2.7.10.1-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[G5DHm]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[GLUTKIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.7.12.1-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[2.7.12.2-RXN]]
+
* [[GLUTSEMIALDEHYDROG-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PROTEIN-KINASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14906]]
+
== Pathway(s) associated ==
−
** Category: [[annotation]]
+
* [[PWY-6922]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[RXN-16317]]
+
* [[ARGININE-SYN4-PWY]]
−
** Category: [[annotation]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY-3341]]
−
</div>
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PROSYN-PWY]]
−
{{#set: right-end-position=184873}}
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
{{#set: left-end-position=179088}}
+
* [[CITRULBIO-PWY]]
−
{{#set: centisome-position=79.86835   }}
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
{{#set: transcription-direction=positive}}
−
{{#set: nb reaction associated=6}}
+
{{#set: right-end-position=510784}}
 +
{{#set: left-end-position=495267}}
 +
{{#set: centisome-position=93.25499   }}
 +
{{#set: organism associated=S.japonica_sterols_curated}}
 +
{{#set: nb reaction associated=4}}
 +
{{#set: nb pathway associated=5}}

Revision as of 20:26, 18 December 2020

Gene SJ02923

  • transcription-direction:
    • positive
  • right-end-position:
    • 510784
  • left-end-position:
    • 495267
  • centisome-position:
    • 93.25499

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341
    • 4 reactions found over 3 reactions in the full pathway
  • PROSYN-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09456&oldid=44138"