Difference between revisions of "SJ09463"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ19480 == * transcription-direction: ** negative * right-end-position: ** 27974 * left-end-position: ** 21016 * centisome-position: ** 9.269624...")
(Created page with "Category:gene == Gene SJ09463 == * transcription-direction: ** negative * right-end-position: ** 413302 * left-end-position: ** 403350 * centisome-position: ** 97.07815...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ19480 ==
+
== Gene SJ09463 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 27974
+
** 413302
 
* left-end-position:
 
* left-end-position:
−
** 21016
+
** 403350
 
* centisome-position:
 
* centisome-position:
−
** 9.269624    
+
** 97.07815    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CYCLOEUCALENOL-CYCLOISOMERASE-RXN]]
−
* [[ARG-OXIDATION-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[L-AMINO-ACID-OXIDASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[L-ASPARTATE-OXID-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14971]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-15378]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-17130]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9772]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
+
* [[RXN-11876]]
 +
** Category: [[manual]]
 +
*** source: [[reactions_add_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.)
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7155]]
−
* [[ARGDEG-IV-PWY]]
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-2541]]
−
* [[PYRIDNUCSYN-PWY]]
+
** '''11''' reactions found over '''35''' reactions in the full pathway
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-8191]]
−
* [[PWY-5316]]
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7342]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P105-PWY]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[TCA]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-561]]
 
−
** '''6''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
 
** '''11''' reactions found over '''19''' reactions in the full pathway
 
** '''11''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY0-1353]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3781]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7279]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-4302]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1329]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=27974}}
+
{{#set: right-end-position=413302}}
−
{{#set: left-end-position=21016}}
+
{{#set: left-end-position=403350}}
−
{{#set: centisome-position=9.269624   }}
+
{{#set: centisome-position=97.07815   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=17}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:09, 18 March 2021

Gene SJ09463

  • transcription-direction:
    • negative
  • right-end-position:
    • 413302
  • left-end-position:
    • 403350
  • centisome-position:
    • 97.07815

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7155
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-2541
    • 11 reactions found over 35 reactions in the full pathway
  • PWY-8191
    • 11 reactions found over 19 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09463&oldid=135780"