Difference between revisions of "SJ09668"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COB-I-ALAMIN COB-I-ALAMIN] == * common-name: ** cob(i)alamin * smiles: ** cc%10(=c(c)c=c9(n8(c%...")
 
(Created page with "Category:gene == Gene SJ09668 == * transcription-direction: ** positive * right-end-position: ** 256171 * left-end-position: ** 248515 * centisome-position: ** 60.96717...")
 
(9 intermediate revisions by 5 users not shown)
Line 1: Line 1:
−
[[Category:metabolite]]
+
[[Category:gene]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COB-I-ALAMIN COB-I-ALAMIN] ==
+
== Gene SJ09668 ==
−
* common-name:
+
* transcription-direction:
−
** cob(i)alamin
+
** positive
−
* smiles:
+
* right-end-position:
−
** cc%10(=c(c)c=c9(n8(c%12(oc(co)c(op([o-])(=o)oc(c)cnc(=o)ccc1(c)(c(cc(n)=o)[ch]%11(c7(c)(c(c)(cc(n)=o)c(ccc(=o)n)c6(c(c)=c5(c(cc(=o)n)(c)c(ccc(n)=o)c4(c=c3(c(c)(c)c(ccc(n)=o)c2(c(c)=c1n([co----]([n+]=23)([n+]=45)([n+]=67)[n+](=c8)c9=c%10)%11)))))))))c(o)%12))))
+
** 256171
−
* inchi-key:
+
* left-end-position:
−
** omaokvyasdiyqg-dsrcudddsa-l
+
** 248515
−
* molecular-weight:
+
* centisome-position:
−
** 1329.36
+
** 60.96717   
−
== Reaction(s) known to consume the compound ==
+
== Organism(s) associated with this gene  ==
−
* [[COBALADENOSYLTRANS-RXN]]
+
* [[S.japonica_carotenoid_curated]]
−
* [[ExchangeSeed-COB-I-ALAMIN]]
+
== Reaction(s) associated ==
−
* [[TransportSeed-COB-I-ALAMIN]]
+
* [[ATPASE-RXN]]
−
== Reaction(s) known to produce the compound ==
+
** Category: [[annotation]]
−
* [[ExchangeSeed-COB-I-ALAMIN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[TransportSeed-COB-I-ALAMIN]]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
== Reaction(s) of unknown directionality ==
+
** Category: [[annotation]]
−
{{#set: common-name=cob(i)alamin}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: inchi-key=inchikey=omaokvyasdiyqg-dsrcudddsa-l}}
+
* [[RXN-12195]]
−
{{#set: molecular-weight=1329.36}}
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12196]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5462]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
* [[PWY-6545]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7210]]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=256171}}
 +
{{#set: left-end-position=248515}}
 +
{{#set: centisome-position=60.96717    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=5}}
 +
{{#set: nb pathway associated=4}}

Latest revision as of 11:02, 18 March 2021

Gene SJ09668

  • transcription-direction:
    • positive
  • right-end-position:
    • 256171
  • left-end-position:
    • 248515
  • centisome-position:
    • 60.96717

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09668&oldid=132313"