Difference between revisions of "SJ09717"
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(Created page with "Category:gene == Gene SJ19664 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * 4.2.2.10-RXN ** Catego...") |
(Created page with "Category:gene == Gene SJ00045 == * transcription-direction: ** positive * right-end-position: ** 706887 * left-end-position: ** 685451 * centisome-position: ** 46.659313...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ00045 == |
| + | * transcription-direction: | ||
| + | ** positive | ||
| + | * right-end-position: | ||
| + | ** 706887 | ||
| + | * left-end-position: | ||
| + | ** 685451 | ||
| + | * centisome-position: | ||
| + | ** 46.659313 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[CHORISMATEMUT-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[RXN- | + | * [[PPDH]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PREPHENATE-DEHYDROGENASE-NADP+-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[PREPHENATEDEHYDRAT-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PREPHENATEDEHYDROG-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN-5682]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-3461]] |
| − | ** '''1''' reactions found over ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| + | * [[PWY-6120]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PHESYN]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-7626]] | ||
| + | ** '''1''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWY-3462]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[TYRSYN]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-6627]] | ||
| + | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[PWY-7432]] | ||
| + | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-7303]] | ||
| + | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=706887}} | ||
| + | {{#set: left-end-position=685451}} | ||
| + | {{#set: centisome-position=46.659313 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Revision as of 15:15, 5 January 2021
Contents
Gene SJ00045
- transcription-direction:
- positive
- right-end-position:
- 706887
- left-end-position:
- 685451
- centisome-position:
- 46.659313
Organism(s) associated with this gene
Reaction(s) associated
- CHORISMATEMUT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PPDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PREPHENATE-DEHYDROGENASE-NADP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PREPHENATEDEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PREPHENATEDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-5682
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-3461
- 3 reactions found over 3 reactions in the full pathway
- PWY-6120
- 2 reactions found over 3 reactions in the full pathway
- PHESYN
- 3 reactions found over 3 reactions in the full pathway
- PWY-7626
- 1 reactions found over 10 reactions in the full pathway
- PWY-3462
- 2 reactions found over 3 reactions in the full pathway
- TYRSYN
- 3 reactions found over 3 reactions in the full pathway
- PWY-6627
- 3 reactions found over 15 reactions in the full pathway
- PWY-7432
- 3 reactions found over 2 reactions in the full pathway
- PWY-7303
- 1 reactions found over 4 reactions in the full pathway
