Difference between revisions of "SJ09824"

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(Created page with "Category:gene == Gene SJ02212 == * transcription-direction: ** negative * right-end-position: ** 36226 * left-end-position: ** 22449 * centisome-position: ** 16.035688...")
(Created page with "Category:gene == Gene SJ00207 == * transcription-direction: ** positive * right-end-position: ** 340749 * left-end-position: ** 335329 * centisome-position: ** 58.86001...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02212 ==
+
== Gene SJ00207 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 36226
+
** 340749
 
* left-end-position:
 
* left-end-position:
−
** 22449
+
** 335329
 
* centisome-position:
 
* centisome-position:
−
** 16.035688    
+
** 58.86001    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[CITSYN-RXN]]
+
* [[2.4.1.134-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[2.4.1.151-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[CSm]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[2.4.1.223-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14841]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6557]]
−
* [[P105-PWY]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-7434]]
−
* [[TCA]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-6558]]
−
* [[REDCITCYC]]
+
** '''7''' reactions found over '''13''' reactions in the full pathway
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[PWY66-398]]
+
{{#set: right-end-position=340749}}
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
{{#set: left-end-position=335329}}
−
* [[PWY-7254]]
+
{{#set: centisome-position=58.86001   }}
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY-6969]]
+
{{#set: nb reaction associated=4}}
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
{{#set: nb pathway associated=3}}
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6549]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5750]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5690]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=36226}}
 
−
{{#set: left-end-position=22449}}
 
−
{{#set: centisome-position=16.035688   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=2}}
 
−
{{#set: nb pathway associated=14}}
 

Revision as of 14:46, 5 January 2021

Gene SJ00207

  • transcription-direction:
    • positive
  • right-end-position:
    • 340749
  • left-end-position:
    • 335329
  • centisome-position:
    • 58.86001

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6557
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7434
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6558
    • 7 reactions found over 13 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09824&oldid=55133"