Difference between revisions of "SJ09824"

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(Created page with "Category:gene == Gene SJ00207 == * transcription-direction: ** positive * right-end-position: ** 340749 * left-end-position: ** 335329 * centisome-position: ** 58.86001...")
(Created page with "Category:gene == Gene SJ02212 == * transcription-direction: ** negative * right-end-position: ** 36226 * left-end-position: ** 22449 * centisome-position: ** 16.035688...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00207 ==
+
== Gene SJ02212 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 340749
+
** 36226
 
* left-end-position:
 
* left-end-position:
−
** 335329
+
** 22449
 
* centisome-position:
 
* centisome-position:
−
** 58.86001    
+
** 16.035688    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.4.1.134-RXN]]
+
* [[CITSYN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[2.4.1.151-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[CSm]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[2.4.1.223-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14841]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6557]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[P105-PWY]]
−
* [[PWY-7434]]
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
* [[TCA]]
−
* [[PWY-6558]]
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
** '''7''' reactions found over '''13''' reactions in the full pathway
+
* [[REDCITCYC]]
−
{{#set: transcription-direction=positive}}
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
{{#set: right-end-position=340749}}
+
* [[PWY66-398]]
−
{{#set: left-end-position=335329}}
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
{{#set: centisome-position=58.86001   }}
+
* [[PWY-7254]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7124]]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6549]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5750]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5690]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=36226}}
 +
{{#set: left-end-position=22449}}
 +
{{#set: centisome-position=16.035688   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=14}}

Revision as of 18:45, 14 January 2021

Gene SJ02212

  • transcription-direction:
    • negative
  • right-end-position:
    • 36226
  • left-end-position:
    • 22449
  • centisome-position:
    • 16.035688

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • TCA
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5750
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway




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