Difference between revisions of "SJ09885"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ01009 == * transcription-direction: ** positive * right-end-position: ** 81048 * left-end-position: ** 71004 * centisome-position: ** 44.793236...") |
(Created page with "Category:gene == Gene SJ18541 == * transcription-direction: ** positive * right-end-position: ** 145855 * left-end-position: ** 135008 * centisome-position: ** 55.630047...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ18541 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 145855 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 135008 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 55.630047 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ASPCARBTRANS-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ORNCARBAMTRANSFER-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
− | ** | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | ** | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * [[RXN-13482]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-9]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-5686]] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7790]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7791]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-4984]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[CITRULLINE-DEG-PWY]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[ARGSYNBSUB-PWY]] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7400]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ARGSYN-PWY]] | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-4981]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=145855}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=135008}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=55.630047 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=4}} | {{#set: nb reaction associated=4}} | ||
+ | {{#set: nb pathway associated=11}} |
Revision as of 18:45, 14 January 2021
Contents
Gene SJ18541
- transcription-direction:
- positive
- right-end-position:
- 145855
- left-end-position:
- 135008
- centisome-position:
- 55.630047
Organism(s) associated with this gene
Reaction(s) associated
- ASPCARBTRANS-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- ORNCARBAMTRANSFER-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-13482
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-9
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-5686
- 6 reactions found over 6 reactions in the full pathway
- PWY-7790
- 5 reactions found over 6 reactions in the full pathway
- PWY-7791
- 5 reactions found over 6 reactions in the full pathway
- PWY-4984
- 5 reactions found over 5 reactions in the full pathway
- CITRULLINE-DEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY
- 5 reactions found over 4 reactions in the full pathway
- PWY-4981
- 3 reactions found over 6 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- PWY-5
- 3 reactions found over 4 reactions in the full pathway