Difference between revisions of "SJ10005"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2121 CPD0-2121] == * common-name: ** trans-hex-2-enoyl-coa * smiles: ** cccc=cc(=o)sccnc(=...")
(Created page with "Category:gene == Gene SJ22286 == * transcription-direction: ** negative * right-end-position: ** 168186 * left-end-position: ** 164100 * centisome-position: ** 91.94874...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2121 CPD0-2121] ==
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== Gene SJ22286 ==
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* common-name:
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* transcription-direction:
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** trans-hex-2-enoyl-coa
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** negative
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* smiles:
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* right-end-position:
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** cccc=cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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** 168186
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* inchi-key:
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* left-end-position:
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** oinxhibnzuuimr-ixuyqxaasa-j
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** 164100
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* molecular-weight:
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* centisome-position:
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** 859.631
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** 91.94874   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[ECOAH2h]]
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-12559]]
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== Reaction(s) associated ==
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* [[RXN-14278]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[TRANSENOYLCOARED-RXN-HEXANOYL-COA/NADP//CPD0-2121/NADPH/PROTON.42.]]
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* [[GSHTRAN-RXN]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[ECOAH2h]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12567]]
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** Category: [[orthology]]
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* [[RXN-14278]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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* [[GST-RXN]]
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{{#set: common-name=trans-hex-2-enoyl-coa}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=oinxhibnzuuimr-ixuyqxaasa-j}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=859.631}}
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PROSTAGLANDIN-D-SYNTHASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13673]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15680]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6842]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4061]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY66-374]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7112]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7533]]
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** '''3''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=168186}}
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{{#set: left-end-position=164100}}
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{{#set: centisome-position=91.94874    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=5}}

Revision as of 09:25, 27 August 2019

Gene SJ22286

  • transcription-direction:
    • negative
  • right-end-position:
    • 168186
  • left-end-position:
    • 164100
  • centisome-position:
    • 91.94874

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6842
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-4061
    • 4 reactions found over 8 reactions in the full pathway
  • PWY66-374
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7112
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7533
    • 3 reactions found over 9 reactions in the full pathway




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