Difference between revisions of "SJ10133"
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(Created page with "Category:gene == Gene SJ18895 == * transcription-direction: ** positive * right-end-position: ** 217149 * left-end-position: ** 198617 * centisome-position: ** 84.84787...") |
(Created page with "Category:gene == Gene SJ03594 == * transcription-direction: ** negative * right-end-position: ** 144418 * left-end-position: ** 138649 * centisome-position: ** 13.585687...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ03594 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 144418 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 138649 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 13.585687 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | + | * [[RXN-10642]] | |
− | * [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[UROGENDECARBOX-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
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− | ** Category: [[ | ||
− | *** source: [[ | ||
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== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[PWY-7766]] | |
− | + | ** '''3''' reactions found over '''5''' reactions in the full pathway | |
− | + | * [[CHLOROPHYLL-SYN]] | |
− | * [[PWY- | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[HEME-BIOSYNTHESIS-II]] |
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− | * [[ | ||
− | ** '''6''' reactions found over ''' | ||
− | * [[ | ||
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** '''4''' reactions found over '''4''' reactions in the full pathway | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY0-1415]] |
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5531]] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[HEMESYN2-PWY]] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-7159]] |
− | ** ''' | + | ** '''5''' reactions found over '''9''' reactions in the full pathway |
− | + | {{#set: transcription-direction=negative}} | |
− | + | {{#set: right-end-position=144418}} | |
− | + | {{#set: left-end-position=138649}} | |
− | {{#set: transcription-direction= | + | {{#set: centisome-position=13.585687 }} |
− | {{#set: right-end-position= | + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
− | {{#set: left-end-position= | + | {{#set: nb reaction associated=2}} |
− | {{#set: centisome-position= | + | {{#set: nb pathway associated=7}} |
− | {{#set: organism associated=S. | ||
− | {{#set: nb reaction associated= | ||
− | {{#set: nb pathway associated= |
Revision as of 14:49, 5 January 2021
Contents
Gene SJ03594
- transcription-direction:
- negative
- right-end-position:
- 144418
- left-end-position:
- 138649
- centisome-position:
- 13.585687
Organism(s) associated with this gene
Reaction(s) associated
- RXN-10642
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- UROGENDECARBOX-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7766
- 3 reactions found over 5 reactions in the full pathway
- CHLOROPHYLL-SYN
- 6 reactions found over 9 reactions in the full pathway
- HEME-BIOSYNTHESIS-II
- 4 reactions found over 4 reactions in the full pathway
- PWY0-1415
- 5 reactions found over 4 reactions in the full pathway
- PWY-5531
- 4 reactions found over 9 reactions in the full pathway
- HEMESYN2-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-7159
- 5 reactions found over 9 reactions in the full pathway