Difference between revisions of "SJ10418"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12853 CPD-12853] == * common-name: ** 4α-methyl-5α-cholesta-8,14,24-trien-3&bet...")
(Created page with "Category:gene == Gene SJ10418 == * transcription-direction: ** positive * right-end-position: ** 172479 * left-end-position: ** 116451 * centisome-position: ** 29.735561...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12853 CPD-12853] ==
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== Gene SJ10418 ==
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* common-name:
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* transcription-direction:
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** 4α-methyl-5α-cholesta-8,14,24-trien-3β-ol
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** positive
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* smiles:
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* right-end-position:
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** cc(c)=cccc(c)[ch]3(cc=c4(c2(cc[ch]1(c(c)c(o)ccc(c)1c=2ccc(c)34))))
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** 172479
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* inchi-key:
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* left-end-position:
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** qjvmeazhjkxwjd-hesbynjasa-n
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** 116451
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* molecular-weight:
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* centisome-position:
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** 396.655
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** 29.735561   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to produce the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-11881]]
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=4&alpha;-methyl-5&alpha;-cholesta-8,14,24-trien-3&beta;-ol}}
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* [[GPPSYN-RXN]]
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{{#set: inchi-key=inchikey=qjvmeazhjkxwjd-hesbynjasa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=396.655}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-11486]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9003]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9384]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-5180]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-6383]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7410]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7102]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6859]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7736]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5122]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7141]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7659]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7709]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5123]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7182]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6520]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7235]]
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** '''3''' reactions found over '''n.a''' reactions in the full pathway
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* [[PWY3O-19]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5815]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5805]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=172479}}
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{{#set: left-end-position=116451}}
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{{#set: centisome-position=29.735561    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=6}}
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{{#set: nb pathway associated=16}}

Latest revision as of 11:01, 18 March 2021

Gene SJ10418

  • transcription-direction:
    • positive
  • right-end-position:
    • 172479
  • left-end-position:
    • 116451
  • centisome-position:
    • 29.735561

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6520
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7235
    • 3 reactions found over n.a reactions in the full pathway
  • PWY3O-19
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5815
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5805
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ10418&oldid=131869"