Difference between revisions of "SJ10422"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA GLUTACONYL-COA] == * common-name: ** (e)-glutaconyl-coa * smiles: ** cc(c)(c(o)c...")
 
(Created page with "Category:gene == Gene SJ10422 == * transcription-direction: ** negative * right-end-position: ** 18996 * left-end-position: ** 11430 * centisome-position: ** 37.811375...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA GLUTACONYL-COA] ==
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== Gene SJ10422 ==
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* common-name:
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* transcription-direction:
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** (e)-glutaconyl-coa
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** negative
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* smiles:
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* right-end-position:
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** cc(c)(c(o)c(=o)nccc(=o)nccsc(c=ccc(=o)[o-])=o)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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** 18996
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* inchi-key:
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* left-end-position:
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** urtlotisfjppou-degqqwijsa-i
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** 11430
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* molecular-weight:
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* centisome-position:
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** 874.579
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** 37.811375   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[GLUTACONYL-COA-DECARBOXYLASE-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[GLUTARYL-COA-DEHYDROG-RXN]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[NADH-DEHYDROG-A-RXN]]
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* [[GLUTACONYL-COA-DECARBOXYLASE-RXN]]
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** Category: [[annotation]]
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* [[GLUTARYL-COA-DEHYDROG-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=(e)-glutaconyl-coa}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=urtlotisfjppou-degqqwijsa-i}}
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* [[NADH-DEHYDROGENASE-QUINONE-RXN]]
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{{#set: molecular-weight=874.579}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[NADH-DEHYDROGENASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5330]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY0-1335]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-4302]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-3781]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-1334]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6692]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5083]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY0-1573]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7269]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY0-1568]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1567]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7279]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=18996}}
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{{#set: left-end-position=11430}}
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{{#set: centisome-position=37.811375    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=4}}
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{{#set: nb pathway associated=11}}

Latest revision as of 11:01, 18 March 2021

Gene SJ10422

  • transcription-direction:
    • negative
  • right-end-position:
    • 18996
  • left-end-position:
    • 11430
  • centisome-position:
    • 37.811375

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-1335
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-4302
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3781
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1334
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6692
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-5083
    • 5 reactions found over 6 reactions in the full pathway
  • PWY0-1573
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ10422&oldid=132111"