Difference between revisions of "SJ10585"

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(Created page with "Category:gene == Gene SJ11377 == * transcription-direction: ** negative * right-end-position: ** 106459 * left-end-position: ** 95958 * centisome-position: ** 25.733938...")
(Created page with "Category:gene == Gene SJ10585 == * transcription-direction: ** positive * right-end-position: ** 137833 * left-end-position: ** 130711 * centisome-position: ** 33.678333...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11377 ==
+
== Gene SJ10585 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 106459
+
** 137833
 
* left-end-position:
 
* left-end-position:
−
** 95958
+
** 130711
 
* centisome-position:
 
* centisome-position:
−
** 25.733938    
+
** 33.678333    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RXN-14554]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3.1.1.64-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[6PGLUCONOLACT-RXN]]
−
{{#set: right-end-position=106459}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=95958}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=25.733938   }}
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[CARBOXYLESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10711]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10767]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12252]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12575]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXNQT-4366]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
* [[GLYCOLYSIS-E-D]]
 +
** '''4''' reactions found over '''2''' reactions in the full pathway
 +
* [[OXIDATIVEPENT-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[RUMP-PWY]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-6303]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6857]]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=137833}}
 +
{{#set: left-end-position=130711}}
 +
{{#set: centisome-position=33.678333   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=9}}
 +
{{#set: nb pathway associated=6}}

Latest revision as of 11:02, 18 March 2021

Gene SJ10585

  • transcription-direction:
    • positive
  • right-end-position:
    • 137833
  • left-end-position:
    • 130711
  • centisome-position:
    • 33.678333

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYCOLYSIS-E-D
    • 4 reactions found over 2 reactions in the full pathway
  • OXIDATIVEPENT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ10585&oldid=132669"