Difference between revisions of "SJ10658"

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(Created page with "Category:gene == Gene SJ18402 == * transcription-direction: ** positive * right-end-position: ** 89915 * left-end-position: ** 62103 * centisome-position: ** 25.144646...")
(Created page with "Category:gene == Gene SJ19669 == * transcription-direction: ** negative * right-end-position: ** 369144 * left-end-position: ** 350818 * centisome-position: ** 55.55955...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18402 ==
+
== Gene SJ19669 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 89915
+
** 369144
 
* left-end-position:
 
* left-end-position:
−
** 62103
+
** 350818
 
* centisome-position:
 
* centisome-position:
−
** 25.144646    
+
** 55.55955    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
* [[ACOAD1f]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[5-NUCLEOTID-RXN]]
+
* [[ACYL-COA-OXIDASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[AMP-DEPHOSPHORYLATION-RXN]]
+
* [[ACYLCOADEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOTIDASE-RXN]]
+
* [[BUTYRYL-COA-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14025]]
+
* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14026]]
+
* [[RXN-10696]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10706]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10707]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11026]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12518]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12669]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13449]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14264]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14576]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14771]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14227]]
+
* [[RXN-14775]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14785]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14473]]
+
* [[RXN-14789]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17947]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17948]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5841]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7607]]
+
* [[RXN-14796]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7609]]
+
* [[RXN-16134]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[XMPXAN-RXN]]
+
* [[RXN-17113]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 76: Line 83:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[SALVADEHYPOX-PWY]]
+
* [[FAO-PWY]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7821]]
+
* [[PWY-6583]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7185]]
+
* [[PWY-5022]]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5676]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P163-PWY]]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5677]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[CENTFERM-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P162-PWY]]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[P3-PWY]]
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-735]]
 +
** '''16''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7007]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7288]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5136]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5381]]
+
* [[PWY66-391]]
−
** '''6''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[NAD-BIOSYNTHESIS-II]]
+
* [[PWY-6837]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6596]]
+
* [[PWY-6920]]
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6606]]
+
* [[PWY-7291]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6607]]
+
* [[PWY-7337]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6608]]
+
* [[PWY-7338]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-5695]]
+
* [[PWY-7340]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7606]]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7726]]
 +
** '''8''' reactions found over '''13''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=89915}}
+
{{#set: right-end-position=369144}}
−
{{#set: left-end-position=62103}}
+
{{#set: left-end-position=350818}}
−
{{#set: centisome-position=25.144646   }}
+
{{#set: centisome-position=55.55955   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=14}}
+
{{#set: nb reaction associated=21}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=22}}

Revision as of 09:25, 27 August 2019

Gene SJ19669

  • transcription-direction:
    • negative
  • right-end-position:
    • 369144
  • left-end-position:
    • 350818
  • centisome-position:
    • 55.55955

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6583
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5022
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5676
    • 4 reactions found over 5 reactions in the full pathway
  • P163-PWY
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-5677
    • 1 reactions found over 7 reactions in the full pathway
  • CENTFERM-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • P162-PWY
    • 7 reactions found over 11 reactions in the full pathway
  • P3-PWY
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-735
    • 16 reactions found over 19 reactions in the full pathway
  • PWY-7007
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-391
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6837
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6920
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7291
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7337
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7338
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7340
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7606
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-7726
    • 8 reactions found over 13 reactions in the full pathway




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