Difference between revisions of "SJ11297"
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(Created page with "Category:gene == Gene SJ13814 == * transcription-direction: ** negative * right-end-position: ** 57401 * left-end-position: ** 48215 * centisome-position: ** 14.60388...") |
(Created page with "Category:gene == Gene SJ11297 == * transcription-direction: ** negative * right-end-position: ** 440735 * left-end-position: ** 430484 * centisome-position: ** 54.939716...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ11297 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 440735 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 430484 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 54.939716 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11754]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-14177]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-9227]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9235]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN-9242]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN3O-54]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''8''' reactions found over '''9''' reactions in the full pathway | + | * [[PWY-6708]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''8''' reactions in the full pathway |
− | ** '''8''' reactions found over '''8''' reactions in the full pathway | + | * [[PWY-5870]] |
− | * [[PWY- | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-5855]] |
− | * [[PWY- | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
− | ** '''9''' reactions found over '''9''' reactions in the full pathway | + | * [[PWY-5873]] |
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5857]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5872]] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5871]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5856]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY3O-19]] | ||
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7230]] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7233]] | ||
+ | ** '''3''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=440735}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=430484}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=54.939716 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=11}} |
Latest revision as of 11:06, 18 March 2021
Contents
Gene SJ11297
- transcription-direction:
- negative
- right-end-position:
- 440735
- left-end-position:
- 430484
- centisome-position:
- 54.939716
Organism(s) associated with this gene
Reaction(s) associated
- 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-11754
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14177
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-9227
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9235
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9242
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN3O-54
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6708
- 5 reactions found over 8 reactions in the full pathway
- PWY-5870
- 4 reactions found over 9 reactions in the full pathway
- PWY-5855
- 3 reactions found over 8 reactions in the full pathway
- PWY-5873
- 3 reactions found over 8 reactions in the full pathway
- PWY-5857
- 3 reactions found over 8 reactions in the full pathway
- PWY-5872
- 3 reactions found over 9 reactions in the full pathway
- PWY-5871
- 3 reactions found over 8 reactions in the full pathway
- PWY-5856
- 3 reactions found over 8 reactions in the full pathway
- PWY3O-19
- 4 reactions found over 8 reactions in the full pathway
- PWY-7230
- 3 reactions found over 9 reactions in the full pathway
- PWY-7233
- 3 reactions found over n.a reactions in the full pathway