Difference between revisions of "SJ11643"
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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12127 CPD-12127] == * common-name: ** menaquinol-10 * smiles: ** cc(=cccc(=cccc(c)=cccc(c)=...") |
(Created page with "Category:gene == Gene SJ11643 == * transcription-direction: ** positive * right-end-position: ** 546357 * left-end-position: ** 539250 * centisome-position: ** 69.190056...") |
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− | [[Category: | + | [[Category:gene]] |
− | == | + | == Gene SJ11643 == |
− | * | + | * transcription-direction: |
− | ** | + | ** positive |
− | * | + | * right-end-position: |
− | ** | + | ** 546357 |
− | * | + | * left-end-position: |
− | ** | + | ** 539250 |
− | * | + | * centisome-position: |
− | ** | + | ** 69.190056 |
− | == | + | == Organism(s) associated with this gene == |
− | == | + | * [[S.japonica_carotenoid_curated]] |
− | * [[ | + | == Reaction(s) associated == |
− | + | * [[1.1.1.39-RXN]] | |
− | {{#set: | + | ** Category: [[annotation]] |
− | {{#set: | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | {{#set: | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[MALIC-NADP-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[OXALODECARB-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-7118]] | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7115]] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7686]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-3641]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7384]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7117]] | ||
+ | ** '''10''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-241]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P184-PWY]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6339]] | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[METHYLGALLATE-DEGRADATION-PWY]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=546357}} | ||
+ | {{#set: left-end-position=539250}} | ||
+ | {{#set: centisome-position=69.190056 }} | ||
+ | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
+ | {{#set: nb reaction associated=3}} | ||
+ | {{#set: nb pathway associated=11}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ11643
- transcription-direction:
- positive
- right-end-position:
- 546357
- left-end-position:
- 539250
- centisome-position:
- 69.190056
Organism(s) associated with this gene
Reaction(s) associated
- 1.1.1.39-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- MALIC-NADP-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- OXALODECARB-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7118
- 5 reactions found over 4 reactions in the full pathway
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-7115
- 9 reactions found over 11 reactions in the full pathway
- PWY-7686
- 1 reactions found over 1 reactions in the full pathway
- PWY-3641
- 2 reactions found over 3 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWY-7117
- 10 reactions found over 14 reactions in the full pathway
- PWY-241
- 5 reactions found over 7 reactions in the full pathway
- P184-PWY
- 2 reactions found over 8 reactions in the full pathway
- PWY-6339
- 2 reactions found over 9 reactions in the full pathway
- METHYLGALLATE-DEGRADATION-PWY
- 2 reactions found over 6 reactions in the full pathway