Difference between revisions of "SJ11643"

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(Created page with "Category:gene == Gene SJ11643 == * transcription-direction: ** positive * right-end-position: ** 546357 * left-end-position: ** 539250 * centisome-position: ** 69.190056...")
(Created page with "Category:gene == Gene SJ04586 == * transcription-direction: ** positive * right-end-position: ** 36804 * left-end-position: ** 17554 * centisome-position: ** 16.736586...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11643 ==
+
== Gene SJ04586 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 546357
+
** 36804
 
* left-end-position:
 
* left-end-position:
−
** 539250
+
** 17554
 
* centisome-position:
 
* centisome-position:
−
** 69.190056    
+
** 16.736586    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[1.1.1.39-RXN]]
+
* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[MALIC-NADP-RXN]]
+
* [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[OXALODECARB-RXN]]
+
* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 29: Line 30:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7118]]
+
* [[ILEUSYN-PWY]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[ILEUDEG-PWY]]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[GLUCONEO-PWY]]
+
* [[PWY-5078]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7115]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7686]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3641]]
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7384]]
+
* [[PWY-5103]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7117]]
+
* [[PWY-5104]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-241]]
+
* [[PWY-5101]]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5108]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[LEU-DEG2-PWY]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5076]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7767]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[LEUSYN-PWY]]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[P184-PWY]]
+
* [[VALSYN-PWY]]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6339]]
+
* [[ALANINE-VALINESYN-PWY]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[METHYLGALLATE-DEGRADATION-PWY]]
+
* [[PWY-5057]]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALDEG-PWY]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=546357}}
+
{{#set: right-end-position=36804}}
−
{{#set: left-end-position=539250}}
+
{{#set: left-end-position=17554}}
−
{{#set: centisome-position=69.190056   }}
+
{{#set: centisome-position=16.736586   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=3}}
 
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=15}}

Revision as of 18:43, 14 January 2021

Gene SJ04586

  • transcription-direction:
    • positive
  • right-end-position:
    • 36804
  • left-end-position:
    • 17554
  • centisome-position:
    • 16.736586

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • ILEUDEG-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5078
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5108
    • 2 reactions found over 3 reactions in the full pathway
  • LEU-DEG2-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5076
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7767
    • 1 reactions found over 5 reactions in the full pathway
  • LEUSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ALANINE-VALINESYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5057
    • 2 reactions found over 3 reactions in the full pathway
  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ11643&oldid=93202"