Difference between revisions of "SJ11643"
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(Created page with "Category:gene == Gene SJ11643 == * transcription-direction: ** positive * right-end-position: ** 546357 * left-end-position: ** 539250 * centisome-position: ** 69.190056...") |
(Created page with "Category:gene == Gene SJ04586 == * transcription-direction: ** positive * right-end-position: ** 36804 * left-end-position: ** 17554 * centisome-position: ** 16.736586...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ04586 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 36804 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 17554 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 16.736586 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
Line 29: | Line 30: | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[PWY- | + | * [[ILEUSYN-PWY]] |
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ILEUDEG-PWY]] | ||
** '''5''' reactions found over '''6''' reactions in the full pathway | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
− | + | * [[PWY-5078]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | * [[PWY- | ||
** '''2''' reactions found over '''3''' reactions in the full pathway | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5103]] |
− | ** '''6''' reactions found over ''' | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5104]] |
− | ** ''' | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5101]] |
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5108]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[LEU-DEG2-PWY]] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5076]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7767]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[LEUSYN-PWY]] | ||
** '''5''' reactions found over '''6''' reactions in the full pathway | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
− | * [[ | + | * [[VALSYN-PWY]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[ALANINE-VALINESYN-PWY]] |
− | ** '''2''' reactions found over ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5057]] |
− | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
+ | * [[VALDEG-PWY]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
</div> | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=36804}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=17554}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=16.736586 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=3}} | {{#set: nb reaction associated=3}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=15}} |
Revision as of 18:43, 14 January 2021
Contents
Gene SJ04586
- transcription-direction:
- positive
- right-end-position:
- 36804
- left-end-position:
- 17554
- centisome-position:
- 16.736586
Organism(s) associated with this gene
Reaction(s) associated
- BRANCHED-CHAINAMINOTRANSFERILEU-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- BRANCHED-CHAINAMINOTRANSFERLEU-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- BRANCHED-CHAINAMINOTRANSFERVAL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- ILEUSYN-PWY
- 4 reactions found over 7 reactions in the full pathway
- ILEUDEG-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-5078
- 2 reactions found over 3 reactions in the full pathway
- PWY-5103
- 3 reactions found over 7 reactions in the full pathway
- PWY-5104
- 2 reactions found over 6 reactions in the full pathway
- PWY-5101
- 4 reactions found over 8 reactions in the full pathway
- PWY-5108
- 2 reactions found over 3 reactions in the full pathway
- LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway
- PWY-5076
- 2 reactions found over 3 reactions in the full pathway
- PWY-7767
- 1 reactions found over 5 reactions in the full pathway
- LEUSYN-PWY
- 5 reactions found over 6 reactions in the full pathway
- VALSYN-PWY
- 4 reactions found over 4 reactions in the full pathway
- ALANINE-VALINESYN-PWY
- 1 reactions found over 2 reactions in the full pathway
- PWY-5057
- 2 reactions found over 3 reactions in the full pathway
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway