Difference between revisions of "SJ11661"
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(Created page with "Category:gene == Gene SJ10275 == * transcription-direction: ** positive * right-end-position: ** 293791 * left-end-position: ** 293291 * centisome-position: ** 74.39667...") |
(Created page with "Category:gene == Gene SJ04587 == * transcription-direction: ** positive * right-end-position: ** 80182 * left-end-position: ** 55366 * centisome-position: ** 52.78784...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ04587 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 80182 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 55366 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 52.78784 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[AMP5N]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[ATPASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[DAMPH]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[DMPH]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[I5NT]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN | + | * [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-12195]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-12196]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-14143]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-7609]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[RXN0-5462]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[TPH]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[UMPP]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[X5NT]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
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</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[PWY-6545]] | |
− | + | ** '''8''' reactions found over '''9''' reactions in the full pathway | |
− | + | * [[PWY-7210]] | |
− | * [[PWY- | + | ** '''8''' reactions found over '''8''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7198]] |
− | * [[PWY- | ||
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− | * [[PWY- | ||
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** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
− | + | * [[PWY-7184]] | |
− | + | ** '''9''' reactions found over '''9''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-6606]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | + | * [[PWY-6607]] | |
− | + | ** '''3''' reactions found over '''4''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-6608]] |
− | ** | ||
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− | * [[PWY- | ||
− | ** ''' | ||
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− | * [[PWY- | ||
** '''4''' reactions found over '''4''' reactions in the full pathway | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
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{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=80182}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=55366}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=52.78784 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=14}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 08:21, 15 March 2021
Contents
Gene SJ04587
- transcription-direction:
- positive
- right-end-position:
- 80182
- left-end-position:
- 55366
- centisome-position:
- 52.78784
Organism(s) associated with this gene
Reaction(s) associated
- AMP5N
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ATPASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DAMPH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- DMPH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- I5NT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- NUCLEOSIDE-TRIPHOSPHATASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12195
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12196
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14143
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7609
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-5462
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- TPH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- UMPP
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- X5NT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6545
- 8 reactions found over 9 reactions in the full pathway
- PWY-7210
- 8 reactions found over 8 reactions in the full pathway
- PWY-7198
- 6 reactions found over 7 reactions in the full pathway
- PWY-7184
- 9 reactions found over 9 reactions in the full pathway
- PWY-6606
- 4 reactions found over 4 reactions in the full pathway
- PWY-6607
- 3 reactions found over 4 reactions in the full pathway
- PWY-6608
- 4 reactions found over 4 reactions in the full pathway