Difference between revisions of "SJ11790"

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(Created page with "Category:gene == Gene SJ06442 == * transcription-direction: ** positive * right-end-position: ** 187205 * left-end-position: ** 186762 * centisome-position: ** 39.276394...")
(Created page with "Category:gene == Gene SJ19470 == * transcription-direction: ** positive * right-end-position: ** 100516 * left-end-position: ** 88871 * centisome-position: ** 39.193214...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06442 ==
+
== Gene SJ19470 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 187205
+
** 100516
 
* left-end-position:
 
* left-end-position:
−
** 186762
+
** 88871
 
* centisome-position:
 
* centisome-position:
−
** 39.276394    
+
** 39.193214    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.1.1.135-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PDHam2mi]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PYFLAVOXRE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PYRUFLAVREDUCT-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PYRUVDEH-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12508]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[CYTOCHROME-B5-REDUCTASE-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12583]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[IRON--CYTOCHROME-C-REDUCTASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN]]
+
* [[RXN0-1134]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[R621-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11195]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[NPGLUCAT-PWY]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5493]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6863]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6587]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6588]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-6583]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5483]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[CENTFERM-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[P142-PWY]]
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUDEG-II-PWY]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6142]]
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5538]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6876]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5600]]
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
 +
** '''3''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7218]]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5482]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5537]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6886]]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PYRUVDEHYD-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=187205}}
+
{{#set: right-end-position=100516}}
−
{{#set: left-end-position=186762}}
+
{{#set: left-end-position=88871}}
−
{{#set: centisome-position=39.276394   }}
+
{{#set: centisome-position=39.193214   }}
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=7}}
 +
{{#set: nb pathway associated=25}}

Revision as of 20:27, 18 December 2020

Gene SJ19470

  • transcription-direction:
    • positive
  • right-end-position:
    • 100516
  • left-end-position:
    • 88871
  • centisome-position:
    • 39.193214

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5493
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6587
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-6583
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5483
    • 1 reactions found over 2 reactions in the full pathway
  • CENTFERM-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • P142-PWY
    • 2 reactions found over 1 reactions in the full pathway
  • GLUDEG-II-PWY
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5538
    • 2 reactions found over 2 reactions in the full pathway
  • P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5600
    • 2 reactions found over 1 reactions in the full pathway
  • GLYCOLYSIS-TCA-GLYOX-BYPASS
    • 3 reactions found over 1 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5482
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • PYRUVDEHYD-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ11790&oldid=44308"