Difference between revisions of "SJ12042"

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(Created page with "Category:gene == Gene SJ01075 == * transcription-direction: ** positive * right-end-position: ** 125819 * left-end-position: ** 121341 * centisome-position: ** 77.671165...")
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETAINE BETAINE] == * common-name: ** glycine betaine * smiles: ** c[n+](c)(cc([o-])=o)c * inch...")
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ01075 ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETAINE BETAINE] ==
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* transcription-direction:
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* common-name:
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** positive
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** glycine betaine
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* right-end-position:
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* smiles:
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** 125819
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** c[n+](c)(cc([o-])=o)c
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* left-end-position:
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* inchi-key:
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** 121341
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** kwiuhfftvrnatp-uhfffaoysa-n
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* centisome-position:
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* molecular-weight:
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** 77.671165   
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** 117.147
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[2.1.1.5-RXN]]
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== Reaction(s) associated ==
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* [[BADH-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.]]
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* [[PEROXID-RXN]]
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* [[RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44.]]
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[BADH-RXN]]
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** Category: [[orthology]]
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* [[RXN-13405]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-13406]]
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* [[RXN-14240]]
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* [[RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.]]
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** Category: [[annotation]]
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* [[RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44.]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9680]]
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** Category: [[orthology]]
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== Reaction(s) of unknown directionality ==
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: common-name=glycine betaine}}
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* [[RXN-15288]]
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{{#set: inchi-key=inchikey=kwiuhfftvrnatp-uhfffaoysa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=117.147}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-17352]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-8635]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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* [[PWY-7214]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-7445]]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-5466]]
 
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** '''2''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-6824]]
 
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** '''2''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-5469]]
 
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** '''2''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5461]]
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=125819}}
 
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{{#set: left-end-position=121341}}
 
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{{#set: centisome-position=77.671165    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=5}}
 
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{{#set: nb pathway associated=6}}
 

Revision as of 09:25, 27 August 2019

Metabolite BETAINE

  • common-name:
    • glycine betaine
  • smiles:
    • c[n+](c)(cc([o-])=o)c
  • inchi-key:
    • kwiuhfftvrnatp-uhfffaoysa-n
  • molecular-weight:
    • 117.147

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12042&oldid=29308"