Difference between revisions of "SJ12042"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETAINE BETAINE] == * common-name: ** glycine betaine * smiles: ** c[n+](c)(cc([o-])=o)c * inch...")
(Created page with "Category:gene == Gene SJ12222 == * transcription-direction: ** positive * right-end-position: ** 678221 * left-end-position: ** 672326 * centisome-position: ** 87.89748...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETAINE BETAINE] ==
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== Gene SJ12222 ==
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* common-name:
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* transcription-direction:
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** glycine betaine
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** positive
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* smiles:
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* right-end-position:
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** c[n+](c)(cc([o-])=o)c
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** 678221
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* inchi-key:
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* left-end-position:
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** kwiuhfftvrnatp-uhfffaoysa-n
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** 672326
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* molecular-weight:
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* centisome-position:
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** 117.147
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** 87.89748   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[2.1.1.5-RXN]]
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* [[S.japonica_sterols_curated]]
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* [[BADH-RXN]]
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== Reaction(s) associated ==
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* [[RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44.]]
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* [[3.1.1.64-RXN]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[BADH-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13405]]
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* [[CARBOXYLESTERASE-RXN]]
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* [[RXN-13406]]
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** Category: [[annotation]]
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* [[RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44.]]
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* [[LEUCINE--TRNA-LIGASE-RXN]]
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* [[RXN-9680]]
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** Category: [[annotation]]
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== Reaction(s) of unknown directionality ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=glycine betaine}}
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* [[RETINYL-PALMITATE-ESTERASE-RXN]]
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{{#set: inchi-key=inchikey=kwiuhfftvrnatp-uhfffaoysa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=117.147}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10711]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10767]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12252]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12575]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXNQT-4366]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[TRNA-CHARGING-PWY]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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* [[PWY-6303]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6857]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=678221}}
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{{#set: left-end-position=672326}}
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{{#set: centisome-position=87.89748    }}
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{{#set: organism associated=S.japonica_sterols_curated}}
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{{#set: nb reaction associated=9}}
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{{#set: nb pathway associated=3}}

Revision as of 20:23, 18 December 2020

Gene SJ12222

  • transcription-direction:
    • positive
  • right-end-position:
    • 678221
  • left-end-position:
    • 672326
  • centisome-position:
    • 87.89748

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway




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