Difference between revisions of "SJ12057"
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(Created page with "Category:gene == Gene SJ10244 == * transcription-direction: ** positive * right-end-position: ** 62596 * left-end-position: ** 33464 * centisome-position: ** 8.487284...") |
(Created page with "Category:gene == Gene SJ07216 == * transcription-direction: ** negative * right-end-position: ** 934053 * left-end-position: ** 926385 * centisome-position: ** 63.404297...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ07216 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 934053 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 926385 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 63.404297 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[ACETYLORNTRANSAM-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[RXN- | + | * [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-15007]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[RXN | + | * [[SUCCINYLDIAMINOPIMTRANS-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | |||
| − | |||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[GLUTORN-PWY]] |
| − | ** ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY- | + | * [[ARGSYNBSUB-PWY]] |
| − | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-5154]] |
| − | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[GLYSYN-ALA-PWY]] |
| − | {{#set: right-end-position= | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-7400]] |
| − | {{#set: centisome-position= | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
| + | * [[DAPLYSINESYN-PWY]] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=934053}} | ||
| + | {{#set: left-end-position=926385}} | ||
| + | {{#set: centisome-position=63.404297 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 15:18, 5 January 2021
Contents
Gene SJ07216
- transcription-direction:
- negative
- right-end-position:
- 934053
- left-end-position:
- 926385
- centisome-position:
- 63.404297
Organism(s) associated with this gene
Reaction(s) associated
- ACETYLORNTRANSAM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-15007
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SUCCINYLDIAMINOPIMTRANS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- GLUTORN-PWY
- 5 reactions found over 5 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-5154
- 8 reactions found over 9 reactions in the full pathway
- GLYSYN-ALA-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- DAPLYSINESYN-PWY
- 7 reactions found over 9 reactions in the full pathway
