Difference between revisions of "SJ12118"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] == * common-name: ** cyanocob(iii)alamin * smiles: ** cc4(=c(c)c=c3(n2(c%12(oc...")
(Created page with "Category:gene == Gene SJ12118 == * transcription-direction: ** negative * right-end-position: ** 114146 * left-end-position: ** 108648 * centisome-position: ** 30.0058...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] ==
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== Gene SJ12118 ==
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* common-name:
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* transcription-direction:
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** cyanocob(iii)alamin
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** negative
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* smiles:
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* right-end-position:
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** cc4(=c(c)c=c3(n2(c%12(oc(co)c(op(=o)(o[ch](c)cnc(=o)ccc1(c)(c(cc(=o)n)[ch]%11(c8(c)(c(cc(=o)n)(c)c(ccc(=o)n)c7(c(c)=c%10(c(cc(=o)n)(c)c(ccc(=o)n)c9(c=c6(c(c)(c)c(ccc(=o)n)c5(c(c)=c1n([co---]([n+](=c2)c3=c4)(c#n)([n+]=56)([n+]=78)[n+]=9%10)%11)))))))))[o-])c(o)%12))))
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** 114146
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* inchi-key:
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* left-end-position:
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** rmrcnwbmxrmirw-wzhzpdafsa-l
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** 108648
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* molecular-weight:
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* centisome-position:
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** 1355.377
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** 30.0058   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[ExchangeSeed-CPD-315]]
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* [[S.japonica_carotenoid_curated]]
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* [[TransportSeed-CPD-315]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[GLYCINE-N-METHYLTRANSFERASE-RXN]]
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* [[ExchangeSeed-CPD-315]]
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** Category: [[annotation]]
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* [[TransportSeed-CPD-315]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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* [[RXN-13404]]
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{{#set: common-name=cyanocob(iii)alamin}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=rmrcnwbmxrmirw-wzhzpdafsa-l}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=1355.377}}
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* [[RXN-13405]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13406]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9679]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9680]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[P541-PWY]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6004]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=114146}}
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{{#set: left-end-position=108648}}
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{{#set: centisome-position=30.0058    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=6}}
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{{#set: nb pathway associated=2}}

Latest revision as of 11:01, 18 March 2021

Gene SJ12118

  • transcription-direction:
    • negative
  • right-end-position:
    • 114146
  • left-end-position:
    • 108648
  • centisome-position:
    • 30.0058

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12118&oldid=132065"