Difference between revisions of "SJ12165"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11592 CPD-11592] == * smiles: ** cc(c)=ccnc3(c2(n=cn(c1(oc(cop(=o)([o-])o[a trna])c(op([o-]...")
(Created page with "Category:gene == Gene SJ12165 == * transcription-direction: ** positive * right-end-position: ** 221551 * left-end-position: ** 198181 * centisome-position: ** 54.850376...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11592 CPD-11592] ==
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== Gene SJ12165 ==
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* smiles:
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* transcription-direction:
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** cc(c)=ccnc3(c2(n=cn(c1(oc(cop(=o)([o-])o[a trna])c(op([o-])(=o)o[a trna])c(o)1))c=2n=c(sc)n=3))
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** positive
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* common-name:
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* right-end-position:
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** 2-methylsulfanyl-n6-dimethylallyladenosine37 in trna
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** 221551
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== Reaction(s) known to consume the compound ==
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* left-end-position:
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== Reaction(s) known to produce the compound ==
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** 198181
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* [[RXN-14481]]
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* centisome-position:
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* [[RXN0-5063]]
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** 54.850376   
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== Reaction(s) of unknown directionality ==
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== Organism(s) associated with this gene  ==
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{{#set: common-name=2-methylsulfanyl-n6-dimethylallyladenosine37 in trna}}
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[ATPASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12195]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=221551}}
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{{#set: left-end-position=198181}}
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{{#set: centisome-position=54.850376    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=4}}

Latest revision as of 11:02, 18 March 2021

Gene SJ12165

  • transcription-direction:
    • positive
  • right-end-position:
    • 221551
  • left-end-position:
    • 198181
  • centisome-position:
    • 54.850376

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12165&oldid=132451"