Difference between revisions of "SJ12203"
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(Created page with "Category:gene == Gene SJ04056 == * transcription-direction: ** positive * right-end-position: ** 274210 * left-end-position: ** 263141 * centisome-position: ** 50.775112...") |
(Created page with "Category:gene == Gene SJ12575 == * transcription-direction: ** negative * right-end-position: ** 135143 * left-end-position: ** 125517 * centisome-position: ** 35.091393...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12575 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 135143 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 125517 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 35.091393 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[INDOLE-23-DIOXYGENASE-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-8664]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-8665]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | == Pathway(s) associated == |
| − | {{#set: right-end-position= | + | * [[PWY-7430]] |
| − | {{#set: left-end-position= | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
| − | {{#set: centisome-position= | + | * [[PWY-5651]] |
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-6309]] | ||
| + | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-7765]] | ||
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-7717]] | ||
| + | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[TRPCAT-PWY]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=135143}} | ||
| + | {{#set: left-end-position=125517}} | ||
| + | {{#set: centisome-position=35.091393 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| + | {{#set: nb pathway associated=6}} | ||
Revision as of 13:00, 14 January 2021
Contents
Gene SJ12575
- transcription-direction:
- negative
- right-end-position:
- 135143
- left-end-position:
- 125517
- centisome-position:
- 35.091393
Organism(s) associated with this gene
Reaction(s) associated
- INDOLE-23-DIOXYGENASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-8664
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-8665
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7430
- 1 reactions found over 4 reactions in the full pathway
- PWY-5651
- 3 reactions found over 5 reactions in the full pathway
- PWY-6309
- 7 reactions found over 11 reactions in the full pathway
- PWY-7765
- 3 reactions found over 5 reactions in the full pathway
- PWY-7717
- 3 reactions found over 6 reactions in the full pathway
- TRPCAT-PWY
- 2 reactions found over 3 reactions in the full pathway
