Difference between revisions of "SJ12220"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-Oxo-carboxylates 2-Oxo-carboxylates] == * common-name: ** a 2-oxo carboxylate == Reaction(s)...")
(Created page with "Category:gene == Gene SJ12220 == * transcription-direction: ** positive * right-end-position: ** 663725 * left-end-position: ** 654983 * centisome-position: ** 85.63011...")
 
(8 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
[[Category:metabolite]]
+
[[Category:gene]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-Oxo-carboxylates 2-Oxo-carboxylates] ==
+
== Gene SJ12220 ==
−
* common-name:
+
* transcription-direction:
−
** a 2-oxo carboxylate
+
** positive
−
== Reaction(s) known to consume the compound ==
+
* right-end-position:
−
* [[1.1.1.272-RXN]]
+
** 663725
−
* [[ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
* left-end-position:
−
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
** 654983
−
* [[RXN-13927]]
+
* centisome-position:
−
== Reaction(s) known to produce the compound ==
+
** 85.63011   
−
* [[1.1.1.272-RXN]]
+
== Organism(s) associated with this gene  ==
−
* [[ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
* [[S.japonica_carotenoid_curated]]
−
* [[L-AMINO-ACID-OXIDASE-RXN]]
+
== Reaction(s) associated ==
−
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[RXN-13927]]
+
* [[3.1.1.64-RXN]]
−
* [[S-2-HYDROXY-ACID-OXIDASE-RXN]]
+
** Category: [[annotation]]
−
== Reaction(s) of unknown directionality ==
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: common-name=a 2-oxo carboxylate}}
+
* [[CARBOXYLESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[LEUCINE--TRNA-LIGASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10711]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10767]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12252]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12575]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXNQT-4366]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
* [[TRNA-CHARGING-PWY]]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
* [[PWY-6303]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6857]]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=663725}}
 +
{{#set: left-end-position=654983}}
 +
{{#set: centisome-position=85.63011    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=9}}
 +
{{#set: nb pathway associated=3}}

Latest revision as of 11:01, 18 March 2021

Gene SJ12220

  • transcription-direction:
    • positive
  • right-end-position:
    • 663725
  • left-end-position:
    • 654983
  • centisome-position:
    • 85.63011

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12220&oldid=131776"