Difference between revisions of "SJ12222"

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(Created page with "Category:gene == Gene SJ16180 == * transcription-direction: ** positive * right-end-position: ** 201032 * left-end-position: ** 192550 * centisome-position: ** 67.21307...")
(Created page with "Category:gene == Gene SJ12222 == * transcription-direction: ** positive * right-end-position: ** 678221 * left-end-position: ** 672326 * centisome-position: ** 87.89748...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ16180 ==
+
== Gene SJ12222 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 201032
+
** 678221
 
* left-end-position:
 
* left-end-position:
−
** 192550
+
** 672326
 
* centisome-position:
 
* centisome-position:
−
** 67.21307    
+
** 87.89748    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
+
* [[3.1.1.64-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[6PGLUCONDEHYDROG-RXN]]
+
* [[CARBOXYLESTERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[OHACYL-COA-DEHYDROG-RXN]]
+
* [[LEUCINE--TRNA-LIGASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10698]]
+
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10702]]
+
* [[RXN-10711]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10703]]
+
* [[RXN-10767]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11245]]
+
* [[RXN-12252]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11662]]
+
* [[RXN-12575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12490]]
+
* [[RXNQT-4366]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12570]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12705]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12750]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16133]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17777]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17781]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17786]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17790]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17793]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17794]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17797]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17798]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-905]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9952]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-2044]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[TSA-REDUCT-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[TRNA-CHARGING-PWY]]
−
* [[VALDEG-PWY]]
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-6303]]
−
* [[P122-PWY]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
* [[PWY-6857]]
−
* [[PWY-5136]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[FAO-PWY]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-391]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7007]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-735]]
 
−
** '''16''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-6435]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5177]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7778]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6863]]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6583]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6883]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5789]]
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
−
* [[P162-PWY]]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7216]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7401]]
 
−
** '''6''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-7779]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7094]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6945]]
 
−
** '''5''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6946]]
 
−
** '''6''' reactions found over '''22''' reactions in the full pathway
 
−
* [[PWY-6944]]
 
−
** '''2''' reactions found over '''25''' reactions in the full pathway
 
−
* [[PWY-81]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[OXIDATIVEPENT-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-321]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1361]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GALACTARDEG-PWY]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLUCARDEG-PWY]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
</div>
 
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=201032}}
+
{{#set: right-end-position=678221}}
−
{{#set: left-end-position=192550}}
+
{{#set: left-end-position=672326}}
−
{{#set: centisome-position=67.21307   }}
+
{{#set: centisome-position=87.89748   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=25}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=29}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:04, 18 March 2021

Gene SJ12222

  • transcription-direction:
    • positive
  • right-end-position:
    • 678221
  • left-end-position:
    • 672326
  • centisome-position:
    • 87.89748

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12222&oldid=133477"