Difference between revisions of "SJ12243"

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(Created page with "Category:gene == Gene SJ01234 == * transcription-direction: ** negative * right-end-position: ** 248214 * left-end-position: ** 236690 * centisome-position: ** 42.771072...")
(Created page with "Category:gene == Gene SJ15468 == * transcription-direction: ** positive * right-end-position: ** 55097 * left-end-position: ** 52617 * centisome-position: ** 17.805489...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ01234 ==
+
== Gene SJ15468 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 248214
+
** 55097
 
* left-end-position:
 
* left-end-position:
−
** 236690
+
** 52617
 
* centisome-position:
 
* centisome-position:
−
** 42.771072    
+
** 17.805489    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[GPPSYN-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[4.3.1.17-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[5.1.1.18-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[AMINO-ACID-RACEMASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DSERDEAM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-15125]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14929]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-2541]]
+
* [[RXN-15581]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2381]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN0-2382]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[TRYPSYN-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6196]]
−
* [[PWY-6383]]
+
** '''2''' reactions found over '''n.a''' reactions in the full pathway
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6455]]
−
* [[PWY-7410]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[SERDEG-PWY]]
−
* [[PWY-7102]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-3661]]
−
* [[PWY-6859]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-5497]]
−
* [[PWY-7736]]
+
** '''10''' reactions found over '''24''' reactions in the full pathway
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY0-1535]]
−
* [[PWY-5122]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-6949]]
−
* [[PWY-7141]]
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[TRPSYN-PWY]]
−
* [[PWY-7659]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[PWY-7709]]
+
{{#set: right-end-position=55097}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: left-end-position=52617}}
−
* [[PWY-5123]]
+
{{#set: centisome-position=17.805489   }}
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7182]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7436]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-1422]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=248214}}
 
−
{{#set: left-end-position=236690}}
 
−
{{#set: centisome-position=42.771072   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=8}}

Revision as of 08:20, 15 March 2021

Gene SJ15468

  • transcription-direction:
    • positive
  • right-end-position:
    • 55097
  • left-end-position:
    • 52617
  • centisome-position:
    • 17.805489

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6196
    • 2 reactions found over n.a reactions in the full pathway
  • PWY-6455
    • 1 reactions found over 3 reactions in the full pathway
  • SERDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-3661
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY0-1535
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6949
    • 1 reactions found over 6 reactions in the full pathway
  • TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12243&oldid=121912"