Difference between revisions of "SJ12265"

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(Created page with "Category:gene == Gene SJ07699 == * transcription-direction: ** positive * right-end-position: ** 36626 * left-end-position: ** 30440 * centisome-position: ** 48.318993...")
(Created page with "Category:gene == Gene SJ12265 == * transcription-direction: ** negative * right-end-position: ** 194327 * left-end-position: ** 190320 * centisome-position: ** 52.847874...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07699 ==
+
== Gene SJ12265 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 36626
+
** 194327
 
* left-end-position:
 
* left-end-position:
−
** 30440
+
** 190320
 
* centisome-position:
 
* centisome-position:
−
** 48.318993    
+
** 52.847874    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[QUERCETIN-3-O-METHYLTRANSFERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[RXN-11878]]
 +
** Category: [[manual]]
 +
*** source: [[reactions_add_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.)
 +
* [[RXN-4144]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-1104]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN66-14]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-1143]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN66-306]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13935]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-3422]]
+
</div>
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6064]]
+
* [[PWY-8191]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY-7161]]
+
* [[PWY-2541]]
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''11''' reactions found over '''35''' reactions in the full pathway
−
* [[PWY-2181]]
+
* [[PWY66-3]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''12''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-7498]]
+
* [[PWY-6074]]
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-7186]]
+
* [[PWY66-341]]
−
** '''2''' reactions found over '''12''' reactions in the full pathway
+
** '''14''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-1121]]
+
* [[PWY66-4]]
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''14''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-361]]
+
{{#set: transcription-direction=negative}}
−
** '''7''' reactions found over '''15''' reactions in the full pathway
+
{{#set: right-end-position=194327}}
−
* [[PWY-5168]]
+
{{#set: left-end-position=190320}}
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
{{#set: centisome-position=52.847874   }}
−
* [[PWY-7163]]
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
{{#set: nb reaction associated=4}}
−
{{#set: transcription-direction=positive}}
+
{{#set: nb pathway associated=6}}
−
{{#set: right-end-position=36626}}
 
−
{{#set: left-end-position=30440}}
 
−
{{#set: centisome-position=48.318993   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=5}}
 
−
{{#set: nb pathway associated=9}}
 

Latest revision as of 11:09, 18 March 2021

Gene SJ12265

  • transcription-direction:
    • negative
  • right-end-position:
    • 194327
  • left-end-position:
    • 190320
  • centisome-position:
    • 52.847874

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-8191
    • 11 reactions found over 19 reactions in the full pathway
  • PWY-2541
    • 11 reactions found over 35 reactions in the full pathway
  • PWY66-3
    • 12 reactions found over 18 reactions in the full pathway
  • PWY-6074
    • 6 reactions found over 14 reactions in the full pathway
  • PWY66-341
    • 14 reactions found over 18 reactions in the full pathway
  • PWY66-4
    • 14 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12265&oldid=136090"