Difference between revisions of "SJ12311"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7275 CPD-7275] == * common-name: ** (24r,25r)-3α,7α,12α,24-tetrahydroxy-5...")
 
(Created page with "Category:gene == Gene SJ12311 == * transcription-direction: ** positive * right-end-position: ** 71323 * left-end-position: ** 62936 * centisome-position: ** 17.47863...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7275 CPD-7275] ==
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== Gene SJ12311 ==
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* common-name:
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* transcription-direction:
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** (24r,25r)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl coa
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** positive
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* smiles:
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* right-end-position:
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** cc(ccc(o)c(c)c(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o)[ch]4(cc[ch]5(c(c)4c(o)c[ch]6([ch]5c(o)c[ch]7(c(c)6ccc(o)c7))))
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** 71323
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* inchi-key:
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* left-end-position:
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** pxhzoqnodupjkc-mtlgcjaasa-j
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** 62936
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* molecular-weight:
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* centisome-position:
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** 1212.144
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** 17.47863   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[1.17.99.3-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[4.2.1.107-RXN]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[CARBODEHYDRAT-RXN]]
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* [[1.17.99.3-RXN]]
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** Category: [[annotation]]
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* [[4.2.1.107-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=(24r,25r)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl coa}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=pxhzoqnodupjkc-mtlgcjaasa-j}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=1212.144}}
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* [[RXN0-5224]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-7115]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7117]]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-6142]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5744]]
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** '''4''' reactions found over '''13''' reactions in the full pathway
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* [[PWYQT-4429]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[CYANCAT-PWY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5789]]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5743]]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-241]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=71323}}
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{{#set: left-end-position=62936}}
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{{#set: centisome-position=17.47863    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=2}}
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{{#set: nb pathway associated=9}}

Latest revision as of 11:00, 18 March 2021

Gene SJ12311

  • transcription-direction:
    • positive
  • right-end-position:
    • 71323
  • left-end-position:
    • 62936
  • centisome-position:
    • 17.47863

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • CYANCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-241
    • 5 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12311&oldid=131690"