Difference between revisions of "SJ12311"
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(Created page with "Category:gene == Gene SJ07902 == * transcription-direction: ** negative * right-end-position: ** 34240 * left-end-position: ** 23641 * centisome-position: ** 5.2836256...") |
(Created page with "Category:gene == Gene SJ12311 == * transcription-direction: ** positive * right-end-position: ** 71323 * left-end-position: ** 62936 * centisome-position: ** 17.47863...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12311 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 71323 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 62936 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 17.47863 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[RXN | + | * [[CARBODEHYDRAT-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN0-5224]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-7115]] |
| − | ** ''' | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-7117]] |
| − | {{#set: right-end-position= | + | ** '''10''' reactions found over '''14''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-6142]] |
| − | {{#set: centisome-position= | + | ** '''10''' reactions found over '''13''' reactions in the full pathway |
| + | * [[PWY-5744]] | ||
| + | ** '''4''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWYQT-4429]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[CYANCAT-PWY]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-5789]] | ||
| + | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY-5743]] | ||
| + | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWY-241]] | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=71323}} | ||
| + | {{#set: left-end-position=62936}} | ||
| + | {{#set: centisome-position=17.47863 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=2}} | {{#set: nb reaction associated=2}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Latest revision as of 11:00, 18 March 2021
Contents
Gene SJ12311
- transcription-direction:
- positive
- right-end-position:
- 71323
- left-end-position:
- 62936
- centisome-position:
- 17.47863
Organism(s) associated with this gene
Reaction(s) associated
- CARBODEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-5224
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7115
- 9 reactions found over 11 reactions in the full pathway
- PWY-7117
- 10 reactions found over 14 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY-5744
- 4 reactions found over 13 reactions in the full pathway
- PWYQT-4429
- 2 reactions found over 2 reactions in the full pathway
- CYANCAT-PWY
- 2 reactions found over 3 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- PWY-5743
- 5 reactions found over 13 reactions in the full pathway
- PWY-241
- 5 reactions found over 7 reactions in the full pathway
