Difference between revisions of "SJ12405"

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(Created page with "Category:gene == Gene SJ10617 == * transcription-direction: ** positive * right-end-position: ** 270840 * left-end-position: ** 254884 * centisome-position: ** 65.84159...")
(Created page with "Category:gene == Gene SJ12405 == * transcription-direction: ** negative * right-end-position: ** 215448 * left-end-position: ** 205069 * centisome-position: ** 57.246822...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ10617 ==
+
== Gene SJ12405 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 270840
+
** 215448
 
* left-end-position:
 
* left-end-position:
−
** 254884
+
** 205069
 
* centisome-position:
 
* centisome-position:
−
** 65.84159    
+
** 57.246822    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ARGDECARBOX-RXN]]
−
* [[3.1.3.74-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[GPH-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[GLUTDECARBOX-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
== Pathway(s) associated ==
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
+
* [[PWY-6305]]
−
** Category: [[annotation]]
+
** '''4''' reactions found over '''n.a''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY0-1299]]
−
* [[PYAMPP]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PWY-40]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[RXN-14181]]
+
* [[PWY-6834]]
−
** Category: [[orthology]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[ARGDEG-III-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-823]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-43]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1305]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUDEG-I-PWY]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4321]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=negative}}
−
* [[PWY-7204]]
+
{{#set: right-end-position=215448}}
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
{{#set: left-end-position=205069}}
−
* [[PWY-181]]
+
{{#set: centisome-position=57.246822   }}
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=270840}}
 
−
{{#set: left-end-position=254884}}
 
−
{{#set: centisome-position=65.84159   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=10}}

Latest revision as of 11:08, 18 March 2021

Gene SJ12405

  • transcription-direction:
    • negative
  • right-end-position:
    • 215448
  • left-end-position:
    • 205069
  • centisome-position:
    • 57.246822

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6305
    • 4 reactions found over n.a reactions in the full pathway
  • PWY0-1299
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-40
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6834
    • 2 reactions found over 4 reactions in the full pathway
  • ARGDEG-III-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-823
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-43
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1305
    • 1 reactions found over 1 reactions in the full pathway
  • GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-4321
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12405&oldid=135207"