Difference between revisions of "SJ12471"

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(Created page with "Category:gene == Gene SJ01234 == * transcription-direction: ** negative * right-end-position: ** 248214 * left-end-position: ** 236690 * centisome-position: ** 42.771072...")
(Created page with "Category:gene == Gene SJ13863 == * transcription-direction: ** positive * right-end-position: ** 43994 * left-end-position: ** 1713 * centisome-position: ** 0.5196436...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ01234 ==
+
== Gene SJ13863 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 248214
+
** 43994
 
* left-end-position:
 
* left-end-position:
−
** 236690
+
** 1713
 
* centisome-position:
 
* centisome-position:
−
** 42.771072    
+
** 0.5196436    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[GPPSYN-RXN]]
+
* [[ALKAPHOSPHA-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-5822]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14929]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-2541]]
+
* [[RXN-8748]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[NADPHOS-DEPHOS-PWY]]
−
* [[PWY-6383]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7410]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7102]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6859]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5122]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7141]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7659]]
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7709]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5123]]
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7182]]
+
* [[PWY-5083]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]]
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5491]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7436]]
+
{{#set: transcription-direction=positive}}
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
{{#set: right-end-position=43994}}
−
* [[PWY-1422]]
+
{{#set: left-end-position=1713}}
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
{{#set: centisome-position=0.5196436   }}
−
</div>
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=248214}}
 
−
{{#set: left-end-position=236690}}
 
−
{{#set: centisome-position=42.771072   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
 
{{#set: nb reaction associated=3}}
 
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=4}}

Revision as of 14:50, 5 January 2021

Gene SJ13863

  • transcription-direction:
    • positive
  • right-end-position:
    • 43994
  • left-end-position:
    • 1713
  • centisome-position:
    • 0.5196436

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • NADPHOS-DEPHOS-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5083
    • 5 reactions found over 6 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-5491
    • 1 reactions found over 2 reactions in the full pathway




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