Difference between revisions of "SJ12497"

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(Created page with "Category:gene == Gene SJ08159 == * transcription-direction: ** positive * right-end-position: ** 269537 * left-end-position: ** 254382 * centisome-position: ** 28.897095...")
(Created page with "Category:gene == Gene SJ12497 == * transcription-direction: ** negative * right-end-position: ** 611275 * left-end-position: ** 591474 * centisome-position: ** 78.917915...")
 
(One intermediate revision by the same user not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ08159 ==
+
== Gene SJ12497 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 269537
+
** 611275
 
* left-end-position:
 
* left-end-position:
−
** 254382
+
** 591474
 
* centisome-position:
 
* centisome-position:
−
** 28.897095    
+
** 78.917915    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ADENYL-KIN-RXN]]
+
* [[3PGAREARR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[CDPKIN-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[DADPKIN-RXN]]
+
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DCDPKIN-RXN]]
+
* [[BISPHOSPHOGLYCERATE-MUTASE-RXN]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DGDPKIN-RXN]]
+
* [[RXN-15509]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DTDPKIN-RXN]]
+
* [[RXN-15510]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DUDPKIN-RXN]]
+
* [[RXN-15511]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GDPKIN-RXN]]
+
* [[RXN-15512]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-DIP-KIN-RXN]]
+
* [[RXN-15513]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11832]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12002]]
+
* [[RXN-17274]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14120]]
+
* [[RXN-17276]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14228]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-7913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[UDPKIN-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7219]]
+
* [[PWY-6142]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7205]]
+
* [[PWY-7003]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''8''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7220]]
+
* [[PWY-7218]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7227]]
+
* [[GLYCOLYSIS]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7224]]
+
* [[P341-PWY]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-6545]]
+
* [[PWY-5723]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7197]]
+
* [[P124-PWY]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY0-166]]
+
* [[PWY-2221]]
−
** '''14''' reactions found over '''13''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7210]]
+
* [[PWY-5484]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6886]]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6901]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7124]]
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[GLUCONEO-PWY]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[PWY-6405]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7222]]
+
* [[PWY-1622]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7226]]
+
* [[ANAGLYCOLYSIS-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7187]]
+
* [[PWY66-399]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PPGPPMET-PWY]]
+
* [[P122-PWY]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-7221]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7176]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=269537}}
+
{{#set: right-end-position=611275}}
−
{{#set: left-end-position=254382}}
+
{{#set: left-end-position=591474}}
−
{{#set: centisome-position=28.897095   }}
+
{{#set: centisome-position=78.917915   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=15}}
+
{{#set: nb reaction associated=10}}
−
{{#set: nb pathway associated=17}}
+
{{#set: nb pathway associated=19}}

Latest revision as of 11:09, 18 March 2021

Gene SJ12497

  • transcription-direction:
    • negative
  • right-end-position:
    • 611275
  • left-end-position:
    • 591474
  • centisome-position:
    • 78.917915

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-6405
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12497&oldid=135857"