Difference between revisions of "SJ12523"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12897 CPD-12897] == * common-name: ** 7-methyl-3-oxooct-6-enoyl-coa * smiles: ** cc(c)=cccc...")
(Created page with "Category:gene == Gene SJ12523 == * transcription-direction: ** negative * right-end-position: ** 317108 * left-end-position: ** 305453 * centisome-position: ** 85.384315...")
 
(8 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
[[Category:metabolite]]
+
[[Category:gene]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12897 CPD-12897] ==
+
== Gene SJ12523 ==
−
* common-name:
+
* transcription-direction:
−
** 7-methyl-3-oxooct-6-enoyl-coa
+
** negative
−
* smiles:
+
* right-end-position:
−
** cc(c)=cccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
+
** 317108
−
* inchi-key:
+
* left-end-position:
−
** lpmixvanmseery-fueukbnzsa-j
+
** 305453
−
* molecular-weight:
+
* centisome-position:
−
** 915.695
+
** 85.384315   
−
== Reaction(s) known to consume the compound ==
+
== Organism(s) associated with this gene  ==
−
* [[RXN-11917]]
+
* [[S.japonica_carotenoid_curated]]
−
== Reaction(s) known to produce the compound ==
+
== Reaction(s) associated ==
−
== Reaction(s) of unknown directionality ==
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=7-methyl-3-oxooct-6-enoyl-coa}}
+
* [[ADENPRIBOSYLTRAN-RXN]]
−
{{#set: inchi-key=inchikey=lpmixvanmseery-fueukbnzsa-j}}
+
** Category: [[orthology]]
−
{{#set: molecular-weight=915.695}}
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[APPRT]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[GUANPRIBOSYLTRAN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[HPRT]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[HYPOXANPRIBOSYLTRAN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[XPPRT]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
* [[PWY-7807]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6610]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7805]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6605]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P121-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6599]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6620]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6609]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=317108}}
 +
{{#set: left-end-position=305453}}
 +
{{#set: centisome-position=85.384315    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=8}}

Latest revision as of 11:01, 18 March 2021

Gene SJ12523

  • transcription-direction:
    • negative
  • right-end-position:
    • 317108
  • left-end-position:
    • 305453
  • centisome-position:
    • 85.384315

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7807
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6610
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7805
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6605
    • 1 reactions found over 2 reactions in the full pathway
  • P121-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6599
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6620
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6609
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12523&oldid=132113"