Difference between revisions of "SJ12662"
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(Created page with "Category:gene == Gene SJ17660 == * transcription-direction: ** positive * right-end-position: ** 379140 * left-end-position: ** 370980 * centisome-position: ** 55.504936...") |
(Created page with "Category:gene == Gene SJ16901 == * transcription-direction: ** negative * right-end-position: ** 128364 * left-end-position: ** 110101 * centisome-position: ** 39.93638...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ16901 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 128364 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 110101 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 39.93638 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[4-COUMARATE--COA-LIGASE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[6.2.1.34-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACETATE--COA-LIGASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[BUTYRATE--COA-LIGASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10919]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-1126]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-2001]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''7''' reactions found over '''9''' reactions in the full pathway | + | * [[PWY-7397]] |
− | {{#set: transcription-direction= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | {{#set: right-end-position= | + | * [[PWY-6320]] |
− | {{#set: left-end-position= | + | ** '''1''' reactions found over '''5''' reactions in the full pathway |
− | {{#set: centisome-position= | + | * [[PWY-6435]] |
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY1F-FLAVSYN]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-361]] | ||
+ | ** '''7''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5135]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7398]] | ||
+ | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7046]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7897]] | ||
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5754]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6920]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6982]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6343]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-1121]] | ||
+ | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY0-1313]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-6672]] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-21]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY66-161]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7118]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY66-162]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7007]] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6673]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6457]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=128364}} | ||
+ | {{#set: left-end-position=110101}} | ||
+ | {{#set: centisome-position=39.93638 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=23}} |
Revision as of 14:21, 26 August 2019
Contents
Gene SJ16901
- transcription-direction:
- negative
- right-end-position:
- 128364
- left-end-position:
- 110101
- centisome-position:
- 39.93638
Organism(s) associated with this gene
Reaction(s) associated
- 4-COUMARATE--COA-LIGASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 6.2.1.34-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- ACETATE--COA-LIGASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- BUTYRATE--COA-LIGASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10919
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-1126
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-2001
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6320
- 1 reactions found over 5 reactions in the full pathway
- PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-361
- 7 reactions found over 15 reactions in the full pathway
- PWY-5135
- 2 reactions found over 4 reactions in the full pathway
- PWY-7398
- 3 reactions found over 13 reactions in the full pathway
- PWY-7046
- 2 reactions found over 6 reactions in the full pathway
- PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-5754
- 2 reactions found over 5 reactions in the full pathway
- PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-6982
- 1 reactions found over 3 reactions in the full pathway
- PWY-6343
- 1 reactions found over 3 reactions in the full pathway
- PWY-1121
- 9 reactions found over 19 reactions in the full pathway
- PWY0-1313
- 1 reactions found over 1 reactions in the full pathway
- PWY-6672
- 4 reactions found over 9 reactions in the full pathway
- PWY66-21
- 3 reactions found over 3 reactions in the full pathway
- PWY66-161
- 2 reactions found over 3 reactions in the full pathway
- PWY-7118
- 5 reactions found over 6 reactions in the full pathway
- PWY66-162
- 3 reactions found over 3 reactions in the full pathway
- PWY-7007
- 4 reactions found over 6 reactions in the full pathway
- PWY-6673
- 1 reactions found over 3 reactions in the full pathway
- PWY-6457
- 1 reactions found over 2 reactions in the full pathway