Difference between revisions of "SJ12670"

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(Created page with "Category:gene == Gene SJ03066 == * transcription-direction: ** negative * right-end-position: ** 85681 * left-end-position: ** 75918 * centisome-position: ** 60.4563 =...")
(Created page with "Category:gene == Gene SJ19104 == * transcription-direction: ** positive * right-end-position: ** 426131 * left-end-position: ** 402172 * centisome-position: ** 35.252983...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03066 ==
+
== Gene SJ19104 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 85681
+
** 426131
 
* left-end-position:
 
* left-end-position:
−
** 75918
+
** 402172
 
* centisome-position:
 
* centisome-position:
−
** 60.4563    
+
** 35.252983    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[4-COUMARATE--COA-LIGASE-RXN]]
+
* [[3.1.1.64-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[6.2.1.34-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[O-SUCCINYLBENZOATE-COA-LIG-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10919]]
+
* [[CARBOXYLESTERASE-RXN]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-1126]]
+
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-2001]]
+
* [[RXN-10711]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7614]]
+
* [[RXN-10767]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12252]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12575]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9733]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXNQT-4366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9623]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[llcoas]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6303]]
−
* [[PWY-7397]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6320]]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6435]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY1F-FLAVSYN]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-361]]
 
−
** '''7''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-5135]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7398]]
 
−
** '''3''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7046]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7897]]
 
−
** '''3''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-5754]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6920]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6982]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6343]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-1121]]
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-5837]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6673]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6457]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5971]]
+
* [[PWY-6857]]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5972]]
+
* [[PWY-6041]]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
</div>
+
{{#set: transcription-direction=positive}}
−
{{#set: transcription-direction=negative}}
+
{{#set: right-end-position=426131}}
−
{{#set: right-end-position=85681}}
+
{{#set: left-end-position=402172}}
−
{{#set: left-end-position=75918}}
+
{{#set: centisome-position=35.252983   }}
−
{{#set: centisome-position=60.4563   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=9}}
 
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=3}}

Revision as of 15:23, 5 January 2021

Gene SJ19104

  • transcription-direction:
    • positive
  • right-end-position:
    • 426131
  • left-end-position:
    • 402172
  • centisome-position:
    • 35.252983

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6041
    • 1 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12670&oldid=70788"