Difference between revisions of "SJ12778"
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(Created page with "Category:gene == Gene SJ05621 == * transcription-direction: ** negative * right-end-position: ** 75496 * left-end-position: ** 65227 * centisome-position: ** 13.2123785...") |
(Created page with "Category:gene == Gene SJ12778 == * transcription-direction: ** positive * right-end-position: ** 63127 * left-end-position: ** 52326 * centisome-position: ** 13.607675...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12778 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 63127 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 52326 |
* centisome-position: | * centisome-position: | ||
| − | ** 13. | + | ** 13.607675 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-12642]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN-12645]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[SPHINGOLIPID-SYN-PWY]] |
| − | ** ''' | + | ** '''4''' reactions found over '''11''' reactions in the full pathway |
| − | * [[ | + | * [[PWY-5129]] |
| + | ** '''4''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWY3DJ-12]] | ||
** '''2''' reactions found over '''4''' reactions in the full pathway | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
| − | {{#set: transcription-direction= | + | {{#set: transcription-direction=positive}} |
| − | {{#set: right-end-position= | + | {{#set: right-end-position=63127}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=52326}} |
| − | {{#set: centisome-position=13. | + | {{#set: centisome-position=13.607675 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
Latest revision as of 11:09, 18 March 2021
Contents
Gene SJ12778
- transcription-direction:
- positive
- right-end-position:
- 63127
- left-end-position:
- 52326
- centisome-position:
- 13.607675
Organism(s) associated with this gene
Reaction(s) associated
- 3-DEHYDROSPHINGANINE-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- RXN-12642
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12645
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- SPHINGOLIPID-SYN-PWY
- 4 reactions found over 11 reactions in the full pathway
- PWY-5129
- 4 reactions found over 13 reactions in the full pathway
- PWY3DJ-12
- 2 reactions found over 4 reactions in the full pathway
