Difference between revisions of "SJ13086"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ07909 == * transcription-direction: ** positive * right-end-position: ** 49612 * left-end-position: ** 35781 * centisome-position: ** 7.9968443...")
(Created page with "Category:gene == Gene SJ03315 == * transcription-direction: ** negative * right-end-position: ** 376824 * left-end-position: ** 354540 * centisome-position: ** 67.37269...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07909 ==
+
== Gene SJ03315 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 49612
+
** 376824
 
* left-end-position:
 
* left-end-position:
−
** 35781
+
** 354540
 
* centisome-position:
 
* centisome-position:
−
** 7.9968443    
+
** 67.37269    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[1.1.3.37-RXN]]
−
* [[ACOA120OR]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACOA140OR]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACOA160OR]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACOA40OR]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACOA80OR]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACYLCOADEHYDROG-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLUTACONYL-COA-DECARBOXYLASE-RXN]]
+
* [[L-GULONOLACTONE-OXIDASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLUTARYL-COA-DEHYDROG-RXN]]
+
* [[RXN-13689]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLUTARYL-COA-DEHYDROGENASE-RXN]]
+
* [[UDPNACETYLMURAMATEDEHYDROG-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[FAO-PWY]]
+
* [[PWY3O-6]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7401]]
+
* [[PWY3DJ-35471]]
−
** '''6''' reactions found over '''15''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5177]]
+
* [[PWY-6387]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[P162-PWY]]
+
* [[PWY0-1261]]
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''12''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-7953]]
−
{{#set: right-end-position=49612}}
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
{{#set: left-end-position=35781}}
+
* [[PWY-6386]]
−
{{#set: centisome-position=7.9968443   }}
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=376824}}
 +
{{#set: left-end-position=354540}}
 +
{{#set: centisome-position=67.37269   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=10}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=6}}

Revision as of 18:50, 14 January 2021

Gene SJ03315

  • transcription-direction:
    • negative
  • right-end-position:
    • 376824
  • left-end-position:
    • 354540
  • centisome-position:
    • 67.37269

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY3O-6
    • 1 reactions found over 3 reactions in the full pathway
  • PWY3DJ-35471
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6387
    • 2 reactions found over 8 reactions in the full pathway
  • PWY0-1261
    • 3 reactions found over 12 reactions in the full pathway
  • PWY-7953
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386
    • 2 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13086&oldid=96611"