Difference between revisions of "SJ13180"
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(Created page with "Category:gene == Gene SJ13233 == * transcription-direction: ** positive * right-end-position: ** 452269 * left-end-position: ** 441249 * centisome-position: ** 59.68947...") |
(Created page with "Category:gene == Gene SJ13180 == * transcription-direction: ** positive * right-end-position: ** 77031 * left-end-position: ** 66996 * centisome-position: ** 19.427013...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13180 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 77031 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 66996 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 19.427013 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[1.1.1.39-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[4.1.3.17-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[ADOMET-DMK-METHYLTRANSFER-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[MALIC-NADP-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[OXALODECARB-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN-12074]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-2464]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** ''' | + | * [[PWY-7118]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
− | ** '''6''' reactions found over '''7''' reactions in the full pathway | + | * [[GLUCONEO-PWY]] |
− | * [[PWY- | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
− | ** '''9''' reactions found over ''' | + | * [[PWY-7115]] |
− | * [[PWY- | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7686]] |
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-3641]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7384]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7701]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[MENAQUINONESYN-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-7117]] | ||
+ | ** '''10''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-241]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P184-PWY]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6339]] | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[METHYLGALLATE-DEGRADATION-PWY]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[GALLATE-DEGRADATION-II-PWY]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GALLATE-DEGRADATION-I-PWY]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=77031}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=66996}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=19.427013 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=15}} |
Latest revision as of 11:07, 18 March 2021
Contents
Gene SJ13180
- transcription-direction:
- positive
- right-end-position:
- 77031
- left-end-position:
- 66996
- centisome-position:
- 19.427013
Organism(s) associated with this gene
Reaction(s) associated
- 1.1.1.39-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 4.1.3.17-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ADOMET-DMK-METHYLTRANSFER-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- MALIC-NADP-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- OXALODECARB-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12074
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-2464
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7118
- 5 reactions found over 4 reactions in the full pathway
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-7115
- 9 reactions found over 11 reactions in the full pathway
- PWY-7686
- 1 reactions found over 1 reactions in the full pathway
- PWY-3641
- 2 reactions found over 3 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWY-7701
- 1 reactions found over 2 reactions in the full pathway
- MENAQUINONESYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-7117
- 10 reactions found over 14 reactions in the full pathway
- PWY-241
- 5 reactions found over 7 reactions in the full pathway
- P184-PWY
- 2 reactions found over 8 reactions in the full pathway
- PWY-6339
- 2 reactions found over 9 reactions in the full pathway
- METHYLGALLATE-DEGRADATION-PWY
- 2 reactions found over 6 reactions in the full pathway
- GALLATE-DEGRADATION-II-PWY
- 1 reactions found over 4 reactions in the full pathway
- GALLATE-DEGRADATION-I-PWY
- 1 reactions found over 5 reactions in the full pathway