Difference between revisions of "SJ13180"

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(Created page with "Category:gene == Gene SJ05197 == * transcription-direction: ** negative * right-end-position: ** 286464 * left-end-position: ** 271039 * centisome-position: ** 54.148346...")
(Created page with "Category:gene == Gene SJ13180 == * transcription-direction: ** positive * right-end-position: ** 77031 * left-end-position: ** 66996 * centisome-position: ** 19.427013...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05197 ==
+
== Gene SJ13180 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 286464
+
** 77031
 
* left-end-position:
 
* left-end-position:
−
** 271039
+
** 66996
 
* centisome-position:
 
* centisome-position:
−
** 54.148346    
+
** 19.427013    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RXN-9839]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[1.1.1.39-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.1.3.17-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ADOMET-DMK-METHYLTRANSFER-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[MALIC-NADP-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[OXALODECARB-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12074]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-2464]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6082]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7118]]
−
* [[PWY-6073]]
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[GLUCONEO-PWY]]
−
{{#set: transcription-direction=negative}}
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
{{#set: right-end-position=286464}}
+
* [[PWY-7115]]
−
{{#set: left-end-position=271039}}
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
{{#set: centisome-position=54.148346   }}
+
* [[PWY-7686]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-3641]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7701]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[MENAQUINONESYN-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-241]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P184-PWY]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6339]]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[METHYLGALLATE-DEGRADATION-PWY]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[GALLATE-DEGRADATION-II-PWY]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GALLATE-DEGRADATION-I-PWY]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=77031}}
 +
{{#set: left-end-position=66996}}
 +
{{#set: centisome-position=19.427013   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=15}}

Latest revision as of 11:07, 18 March 2021

Gene SJ13180

  • transcription-direction:
    • positive
  • right-end-position:
    • 77031
  • left-end-position:
    • 66996
  • centisome-position:
    • 19.427013

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7118
    • 5 reactions found over 4 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7686
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3641
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7701
    • 1 reactions found over 2 reactions in the full pathway
  • MENAQUINONESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-241
    • 5 reactions found over 7 reactions in the full pathway
  • P184-PWY
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6339
    • 2 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY
    • 2 reactions found over 6 reactions in the full pathway
  • GALLATE-DEGRADATION-II-PWY
    • 1 reactions found over 4 reactions in the full pathway
  • GALLATE-DEGRADATION-I-PWY
    • 1 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13180&oldid=134821"