Difference between revisions of "SJ13451"
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(Created page with "Category:gene == Gene SJ09367 == * transcription-direction: ** positive * right-end-position: ** 440879 * left-end-position: ** 428049 * centisome-position: ** 52.15931...") |
(Created page with "Category:gene == Gene SJ13451 == * transcription-direction: ** positive * right-end-position: ** 491930 * left-end-position: ** 476277 * centisome-position: ** 65.36969...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13451 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 491930 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 476277 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 65.36969 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[RXN | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PEPDEPHOS-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN-14117]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14192]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14207]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | |
− | + | * [[PWY-2221]] | |
− | * [[ | ||
** '''6''' reactions found over '''9''' reactions in the full pathway | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-7383]] |
− | ** '''4''' reactions found over ''' | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6901]] |
− | ** ''' | + | ** '''10''' reactions found over '''8''' reactions in the full pathway |
− | * [[ | + | * [[PWY-6142]] |
− | ** ''' | + | ** '''10''' reactions found over '''13''' reactions in the full pathway |
− | * [[PWY | + | * [[NPGLUCAT-PWY]] |
** '''4''' reactions found over '''9''' reactions in the full pathway | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[ | + | * [[P122-PWY]] |
− | ** ''' | + | ** '''16''' reactions found over '''18''' reactions in the full pathway |
+ | * [[PWY-5484]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P124-PWY]] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-1042]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7003]] | ||
+ | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-6886]] | ||
+ | ** '''8''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7218]] | ||
+ | ** '''7''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5723]] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=491930}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=476277}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=65.36969 }} |
− | {{#set: organism associated=S. | + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=17}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ13451
- transcription-direction:
- positive
- right-end-position:
- 491930
- left-end-position:
- 476277
- centisome-position:
- 65.36969
Organism(s) associated with this gene
Reaction(s) associated
- PEPDEPHOS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14117
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14192
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14207
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-2221
- 6 reactions found over 9 reactions in the full pathway
- PWY-7383
- 4 reactions found over 7 reactions in the full pathway
- PWY-6901
- 10 reactions found over 8 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- NPGLUCAT-PWY
- 4 reactions found over 9 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY-7003
- 8 reactions found over 6 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-6886
- 8 reactions found over 5 reactions in the full pathway
- PWY-7218
- 7 reactions found over 4 reactions in the full pathway
- PWY-5723
- 10 reactions found over 10 reactions in the full pathway