Difference between revisions of "SJ13468"
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(Created page with "Category:gene == Gene SJ01225 == * transcription-direction: ** positive * right-end-position: ** 449155 * left-end-position: ** 434760 * centisome-position: ** 78.563324...") |
(Created page with "Category:gene == Gene SJ03464 == * transcription-direction: ** positive * right-end-position: ** 104791 * left-end-position: ** 103898 * centisome-position: ** 86.20452...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ03464 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 104791 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 103898 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 86.20452 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[4OH2OXOGLUTARALDOL-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[DEHYDDEOXPHOSGALACT-ALDOL-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[KDPGALDOL-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13990]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[HYDROXYPRODEG-PWY]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7130]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[GALACTCAT-PWY]] | ||
** '''1''' reactions found over '''3''' reactions in the full pathway | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7310]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-2221]] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ENTNER-DOUDOROFF-PWY]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7562]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7242]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GALACTUROCAT-PWY]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6507]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=104791}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=103898}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=86.20452 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=10}} |
Revision as of 11:03, 15 January 2021
Contents
Gene SJ03464
- transcription-direction:
- positive
- right-end-position:
- 104791
- left-end-position:
- 103898
- centisome-position:
- 86.20452
Organism(s) associated with this gene
Reaction(s) associated
- 4OH2OXOGLUTARALDOL-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- DEHYDDEOXPHOSGALACT-ALDOL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- KDPGALDOL-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13990
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- HYDROXYPRODEG-PWY
- 1 reactions found over 5 reactions in the full pathway
- PWY-7130
- 1 reactions found over 7 reactions in the full pathway
- GALACTCAT-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-7310
- 1 reactions found over 3 reactions in the full pathway
- PWY-2221
- 6 reactions found over 9 reactions in the full pathway
- ENTNER-DOUDOROFF-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-7562
- 1 reactions found over 7 reactions in the full pathway
- PWY-7242
- 1 reactions found over 4 reactions in the full pathway
- GALACTUROCAT-PWY
- 1 reactions found over 5 reactions in the full pathway
- PWY-6507
- 1 reactions found over 5 reactions in the full pathway