Difference between revisions of "SJ13486"

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(Created page with "Category:gene == Gene SJ20943 == * transcription-direction: ** positive * right-end-position: ** 198154 * left-end-position: ** 193169 * centisome-position: ** 95.61023...")
(Created page with "Category:gene == Gene SJ20245 == * transcription-direction: ** negative * right-end-position: ** 162188 * left-end-position: ** 138517 * centisome-position: ** 65.80537...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20943 ==
+
== Gene SJ20245 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 198154
+
** 162188
 
* left-end-position:
 
* left-end-position:
−
** 193169
+
** 138517
 
* centisome-position:
 
* centisome-position:
−
** 95.61023    
+
** 65.80537    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[DLACTDEHYDROGNAD-RXN]]
−
* [[2.6.1.57-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[ASPAMINOTRANS-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[HISTAMINOTRANS-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PHEAMINOTRANS-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10814]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11737]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13697]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14147]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[P122-PWY]]
−
* [[ASPARAGINE-DEG1-PWY-1]]
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[FERMENTATION-PWY]]
−
* [[ASPARTATESYN-PWY]]
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY4LZ-257]]
−
* [[GLUTDEG-PWY]]
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-6454]]
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7383]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7117]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ASPARTATE-DEG1-PWY]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[HISTSYN-PWY]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ANAPHENOXI-PWY]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PHESYN]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7432]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5079]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6318]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6638]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6642]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6643]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-3581]]
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY3O-4108]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5048]]
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[TYRFUMCAT-PWY]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7514]]
 
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5886]]
+
* [[PWY-6901]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7518]]
+
* [[ALACAT2-PWY]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TYRSYN]]
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5754]]
+
{{#set: transcription-direction=negative}}
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
{{#set: right-end-position=162188}}
−
* [[PWY-5151]]
+
{{#set: left-end-position=138517}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: centisome-position=65.80537   }}
−
</div>
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
{{#set: transcription-direction=positive}}
+
{{#set: nb reaction associated=1}}
−
{{#set: right-end-position=198154}}
+
{{#set: nb pathway associated=6}}
−
{{#set: left-end-position=193169}}
 
−
{{#set: centisome-position=95.61023   }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=9}}
 
−
{{#set: nb pathway associated=28}}
 

Revision as of 20:24, 18 December 2020

Gene SJ20245

  • transcription-direction:
    • negative
  • right-end-position:
    • 162188
  • left-end-position:
    • 138517
  • centisome-position:
    • 65.80537

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY4LZ-257
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6454
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • ALACAT2-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13486&oldid=43016"