Difference between revisions of "SJ13508"

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(Created page with "Category:gene == Gene SJ11625 == * transcription-direction: ** positive * right-end-position: ** 382658 * left-end-position: ** 377677 * centisome-position: ** 48.458958...")
(Created page with "Category:gene == Gene SJ13508 == * transcription-direction: ** negative * right-end-position: ** 90702 * left-end-position: ** 60784 * centisome-position: ** 18.153852...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11625 ==
+
== Gene SJ13508 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 382658
+
** 90702
 
* left-end-position:
 
* left-end-position:
−
** 377677
+
** 60784
 
* centisome-position:
 
* centisome-position:
−
** 48.458958    
+
** 18.153852    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[RXN-11109]]
−
* [[1.14.21.6-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
{{#set: transcription-direction=negative}}
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
{{#set: right-end-position=90702}}
−
* [[RXN-11887]]
+
{{#set: left-end-position=60784}}
−
** Category: [[manual]]
+
{{#set: centisome-position=18.153852   }}
−
*** source: [[reactions_add_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.)
 
−
* [[RXN-13883]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13892]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16378]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-22206]]
 
−
** Category: [[manual]]
 
−
*** source: [[reactions_creator_sjap]]; tool: [[unknown-tool]]; comment: gallo2020
 
−
* [[RXN-4209]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN3O-218]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
−
== Pathway(s) associated ==
 
−
* [[PWY66-341]]
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY66-3]]
 
−
** '''12''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY66-4]]
 
−
** '''14''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-8191]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7154]]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7155]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-8238]]
 
−
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-2541]]
 
−
** '''11''' reactions found over '''35''' reactions in the full pathway
 
−
* [[PWY-6075]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=382658}}
 
−
{{#set: left-end-position=377677}}
 
−
{{#set: centisome-position=48.458958   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=9}}
 

Latest revision as of 11:09, 18 March 2021

Gene SJ13508

  • transcription-direction:
    • negative
  • right-end-position:
    • 90702
  • left-end-position:
    • 60784
  • centisome-position:
    • 18.153852

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13508&oldid=135728"