Difference between revisions of "SJ13561"

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(Created page with "Category:gene == Gene SJ21024 == * transcription-direction: ** negative * right-end-position: ** 151499 * left-end-position: ** 139782 * centisome-position: ** 69.468285...")
(Created page with "Category:gene == Gene SJ03316 == * transcription-direction: ** positive * right-end-position: ** 429842 * left-end-position: ** 410570 * centisome-position: ** 78.01997...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ21024 ==
+
== Gene SJ03316 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 151499
+
** 429842
 
* left-end-position:
 
* left-end-position:
−
** 139782
+
** 410570
 
* centisome-position:
 
* centisome-position:
−
** 69.468285    
+
** 78.01997    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[3PGAREARR-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ARACHIDONATE-5-LIPOXYGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[LIPOXYGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-1321]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
* [[RXN-13395]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8497]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8647]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY66-375]]
−
* [[PWY-6142]]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-5410]]
−
* [[PWY-7003]]
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
** '''8''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-5409]]
−
* [[PWY-7218]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''7''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-735]]
−
* [[GLYCOLYSIS]]
+
** '''16''' reactions found over '''19''' reactions in the full pathway
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
* [[PWY66-392]]
−
* [[P341-PWY]]
+
** '''1''' reactions found over '''11''' reactions in the full pathway
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-6917]]
−
* [[PWY-5723]]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-5406]]
−
* [[P124-PWY]]
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
* [[PWY-5407]]
−
* [[PWY-2221]]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5408]]
−
* [[PWY-5484]]
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[PWY-1042]]
+
{{#set: right-end-position=429842}}
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
{{#set: left-end-position=410570}}
−
* [[PWY-6886]]
+
{{#set: centisome-position=78.01997   }}
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6901]]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=151499}}
 
−
{{#set: left-end-position=139782}}
 
−
{{#set: centisome-position=69.468285   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=14}}
+
{{#set: nb pathway associated=9}}

Revision as of 11:03, 15 January 2021

Gene SJ03316

  • transcription-direction:
    • positive
  • right-end-position:
    • 429842
  • left-end-position:
    • 410570
  • centisome-position:
    • 78.01997

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-375
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5410
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5409
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-735
    • 16 reactions found over 19 reactions in the full pathway
  • PWY66-392
    • 1 reactions found over 11 reactions in the full pathway
  • PWY-6917
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5406
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5407
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5408
    • 1 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13561&oldid=106238"