Difference between revisions of "SJ13629"

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(Created page with "Category:gene == Gene SJ12377 == * transcription-direction: ** positive * right-end-position: ** 83912 * left-end-position: ** 22104 * centisome-position: ** 6.150199...")
(Created page with "Category:gene == Gene SJ13629 == * transcription-direction: ** negative * right-end-position: ** 110783 * left-end-position: ** 96049 * centisome-position: ** 28.891607...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12377 ==
+
== Gene SJ13629 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 83912
+
** 110783
 
* left-end-position:
 
* left-end-position:
−
** 22104
+
** 96049
 
* centisome-position:
 
* centisome-position:
−
** 6.150199    
+
** 28.891607    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PEROXID-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[1.8.1.4-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14240]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[2OXOGLUTARATEDEH-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[2OXOGLUTDECARB-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PYRUVDEH-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-18331]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7716]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-15288]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7719]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-17352]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8629]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8635]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN0-1132]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN0-1147]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7214]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-5652]]
−
* [[PWY-7445]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY66-425]]
−
* [[PWY-5466]]
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
* [[LYSINE-DEG1-PWY]]
−
* [[PWY-6824]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-5690]]
−
* [[PWY-5469]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
* [[TCA]]
−
* [[PWY-5461]]
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-7254]]
−
{{#set: transcription-direction=positive}}
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
{{#set: right-end-position=83912}}
+
* [[PWY66-398]]
−
{{#set: left-end-position=22104}}
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
{{#set: centisome-position=6.150199   }}
+
* [[PWY-5084]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
 +
** '''3''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7218]]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5482]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5537]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6886]]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5046]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCLEAV-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PYRUVDEHYD-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=110783}}
 +
{{#set: left-end-position=96049}}
 +
{{#set: centisome-position=28.891607   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=11}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=17}}

Latest revision as of 11:08, 18 March 2021

Gene SJ13629

  • transcription-direction:
    • negative
  • right-end-position:
    • 110783
  • left-end-position:
    • 96049
  • centisome-position:
    • 28.891607

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5652
    • 2 reactions found over 5 reactions in the full pathway
  • PWY66-425
    • 1 reactions found over 9 reactions in the full pathway
  • LYSINE-DEG1-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5084
    • 3 reactions found over 3 reactions in the full pathway
  • GLYCOLYSIS-TCA-GLYOX-BYPASS
    • 3 reactions found over 1 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5482
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-5046
    • 3 reactions found over 3 reactions in the full pathway
  • GLYCLEAV-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PYRUVDEHYD-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13629&oldid=135178"